RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MICU1Q9BPX6 476 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 RSG1Q9BU20 258 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF426Q9BUY5 554 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 PARD6GQ9BYG4 376 aaPredicted RBP3.13□□□□□ -1.91
LINC00540-201ENST00000611481 TMEM38AQ9H6F2 299 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 WDR55Q9H6Y2 383 aaPredicted RBP3.13□□□□□ -1.91
LINC00540-201ENST00000611481 TMEM100Q9NV29 134 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF446Q9NWS9 450 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 C1orf109Q9NX04 203 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 ING4Q9UNL4 249 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 PRELID1Q9Y255 219 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 POLR3HQ9Y535 204 aaPredicted RBP3.13□□□□□ -1.91
LINC00540-201ENST00000611481 A0A0G2JLM5 398 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 LOC102725191A0A1B0GVB3 256 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 SYCE1LA8MT33 242 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 KRTAP16-1A8MUX0 517 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF705EA8MWA4 302 aaPredicted RBP3.12□□□□□ -1.91
LINC00540-201ENST00000611481 PLPP3O14495 311 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 NPIPB7O75200 414 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 TNFAIP8O95379 198 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 SMR3BP02814 79 aaPredicted RBP3.12□□□□□ -1.91
LINC00540-201ENST00000611481 CT45A6P0DMU7 189 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 CT45A5P0DMU8 189 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 CT45A7P0DMV0 189 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 PSKH1P11801 424 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 ATP6V1B2P21281 511 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 SPRP35270 261 aaPredicted RBP3.12□□□□□ -1.91
LINC00540-201ENST00000611481 CD200P41217 278 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 ALDH3B2P48448 385 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 TGM4P49221 684 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 RIDAP52758 137 aaKnown RBP3.12□□□□□ -1.91
LINC00540-201ENST00000611481 BIDP55957 195 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 SRPXP78539 464 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 DR1Q01658 176 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 NAB1Q13506 487 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 TPBGQ13641 420 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 TAL2Q16559 108 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 CT45A1Q5HYN5 189 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 IDNKQ5T6J7 187 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 ACOT7LQ6ZUV0 252 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 STPG2Q8N412 459 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 FTMTQ8N4E7 242 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 MREGQ8N565 214 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 POM121L12Q8N7R1 296 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 DUSP18Q8NEJ0 188 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 OR9Q1Q8NGQ5 310 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 OR5AK3PQ8NH89 298 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 CT45A3Q8NHU0 189 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 CCDC115Q96NT0 180 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 C9orf16Q9BUW7 83 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 TM2D1Q9BX74 207 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 OR2H1Q9GZK4 316 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 PLEKHA1Q9HB21 404 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 RHBDL2Q9NX52 303 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 BTNL2Q9UIR0 455 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 SPATA2Q9UM82 520 aa3.12□□□□□ -1.91
LINC00540-201ENST00000611481 TBL2Q9Y4P3 447 aaKnown RBP3.12□□□□□ -1.91
LINC00540-201ENST00000611481 TEX48A0A1B0GUV7 120 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 TVP23AA6NH52 213 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 SMKR1H3BMG3 65 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 K7EN84 100 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 K7EQG2 157 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 M0QZK8 103 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 SULT1C2O00338 296 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 FAAHO00519 579 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 GPX5O75715 221 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 EIF3GO75821 320 aaKnown RBP eCLIP3.11□□□□□ -1.91
LINC00540-201ENST00000611481 PIAS1O75925 651 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 IGLV1-51P01701 117 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 TFF1P04155 84 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 OCM2P0CE71 109 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 GKN3PP0CG01 181 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 RPS4Y1P22090 263 aaKnown RBP3.11□□□□□ -1.91
LINC00540-201ENST00000611481 PRKACGP22612 351 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 OPRL1P41146 370 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 KIR3DL2P43630 455 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 RPL29P47914 159 aaKnown RBP3.11□□□□□ -1.91
LINC00540-201ENST00000611481 RPL14P50914 215 aaKnown RBP3.11□□□□□ -1.91
LINC00540-201ENST00000611481 SLC25A1P53007 311 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 CEBPGP53567 150 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 KRTAP12-2P59991 146 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 DSTNP60981 165 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 ACTA2P62736 377 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 GNB1P62873 340 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 ACTG2P63267 376 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 ACTC1P68032 377 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 ACTA1P68133 377 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 DYNC1I2Q13409 638 aaKnown RBP3.11□□□□□ -1.91
LINC00540-201ENST00000611481 MADCAM1Q13477 382 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 PSG5Q15238 335 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 CNPY1Q3B7I2 92 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 ACTL10Q5JWF8 245 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 RBM48Q5RL73 367 aaKnown RBP3.11□□□□□ -1.91
LINC00540-201ENST00000611481 TEX36Q5VZQ5 186 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 WDR82Q6UXN9 313 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 Q6ZR54 194 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 AHSA2Q719I0 299 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 RPS27LQ71UM5 84 aaKnown RBP3.11□□□□□ -1.91
LINC00540-201ENST00000611481 PEX26Q7Z412 305 aa3.11□□□□□ -1.91
LINC00540-201ENST00000611481 LRRTM1Q86UE6 522 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms