RNA–Protein interactions for RNA: ENST00000596378.1

SRRM1-222, Transcript of serine and arginine repetitive matrix 1, human

TSL 1 (best)

Gene SRRM1, Length 2,314 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-222	ENST00000596378	DEFB108B	Q8NET1	73 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	PARD6G	Q9BYG4	376 aa	Predicted RBP	18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	MAP1LC3B2	A6NCE7	125 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	C1orf196	B1AJZ1	125 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	OR2C1	O95371	312 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	CCKAR	P32238	428 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	TAGLN2	P37802	199 aa	Known RBP	18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	RPP25L	Q8N5L8	163 aa	Known RBP	18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	MAP1LC3B	Q9GZQ8	125 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	IFI27L2	Q9H2X8	130 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	GCM1	Q9NP62	436 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	CALY	Q9NYX4	217 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	LAMP3	Q9UQV4	416 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	ZGRF1	Q86YA3	2104 aa		18.8	■□□□□ 0.6
SRRM1-222	ENST00000596378	IGHV1-46	P01743	117 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	TLE1	Q04724	770 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	KALRN	O60229	2985 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	DSCAML1	Q8TD84	2053 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	YPEL1	O60688	119 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	FGF7	P21781	194 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	SNRPE	P62304	92 aa	Known RBP	18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	ADAM5	Q6NVV9	412 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	OR10P1	Q8NGE3	313 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	YPEL2	Q96QA6	119 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	TMEM147	Q9BVK8	224 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	DCAF16	Q9NXF7	216 aa		18.79	■□□□□ 0.6
SRRM1-222	ENST00000596378	CD40	P25942	277 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	TNFAIP6	P98066	277 aa	Predicted RBP	18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	CR1L	Q2VPA4	569 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	RNF212	Q495C1	297 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	NIPSNAP3B	Q9BS92	247 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	SH3BGRL2	Q9UJC5	107 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	APC2	O95996	2303 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	F2RL2	O00254	374 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	C17orf58	Q2M2W7	97 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	FAM90A2P	Q658T7	463 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	ABHD17A	Q96GS6	310 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	SLC25A22	Q9H936	323 aa		18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	CISD1	Q9NZ45	108 aa	Known RBP	18.78	■□□□□ 0.6
SRRM1-222	ENST00000596378	IFNA17	P01571	189 aa		18.77	■□□□□ 0.6
SRRM1-222	ENST00000596378	C3orf36	Q3SXR2	165 aa		18.77	■□□□□ 0.6
SRRM1-222	ENST00000596378	PINX1	Q96BK5	328 aa	Known RBP	18.77	■□□□□ 0.6
SRRM1-222	ENST00000596378	YPEL4	Q96NS1	127 aa		18.77	■□□□□ 0.6
SRRM1-222	ENST00000596378	TET2	Q6N021	2002 aa	Predicted RBP	18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	DEFA4	P12838	97 aa		18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	AGA	P20933	346 aa		18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	HOXA1	P49639	335 aa	Predicted RBP	18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	KRTCAP3	Q53RY4	240 aa		18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	PRAMEF5	Q5TYX0	476 aa		18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	ZNF343	Q6P1L6	599 aa		18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	TVP23C	Q96ET8	276 aa		18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	TMPRSS5	Q9H3S3	457 aa		18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	RNF7	Q9UBF6	113 aa		18.77	■□□□□ 0.59
SRRM1-222	ENST00000596378	TANC2	Q9HCD6	1990 aa		18.76	■□□□□ 0.59
SRRM1-222	ENST00000596378	TRAV3	A0A0B4J244	114 aa		18.76	■□□□□ 0.59
SRRM1-222	ENST00000596378		A0A0G2JNJ9	132 aa		18.76	■□□□□ 0.59
SRRM1-222	ENST00000596378	HPRT1	P00492	218 aa		18.76	■□□□□ 0.59
SRRM1-222	ENST00000596378	CIB3	Q96Q77	187 aa	Predicted RBP	18.76	■□□□□ 0.59
SRRM1-222	ENST00000596378		Q9UFV3	132 aa		18.76	■□□□□ 0.59
SRRM1-222	ENST00000596378	PTPRZ1	P23471	2315 aa	Predicted RBP	18.76	■□□□□ 0.59
SRRM1-222	ENST00000596378	PCNX1	Q96RV3	2341 aa		18.76	■□□□□ 0.59
SRRM1-222	ENST00000596378	C15orf62	A8K5M9	175 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	GATA4	P43694	442 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	DOLPP1	Q86YN1	238 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	CA5BP1	Q8WTZ4	195 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	LHX4	Q969G2	390 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	CCL13	Q99616	98 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	SLC39A9	Q9NUM3	307 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	OR6C3	Q9NZP0	311 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	TP53TG5	Q9Y2B4	290 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	TIMM9	Q9Y5J7	89 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	ROS1	P08922	2347 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	CGB3	P0DN86	165 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	CGB7	P0DN87	165 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	ATP6V1F	Q16864	119 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	CISD2	Q8N5K1	135 aa	Known RBP	18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	FAM216B	Q8N7L0	139 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	SNRNP40	Q96DI7	357 aa	Known RBP	18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	NPCDR1	Q9BY65	106 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	URGCP-MRPS24	S4R325	110 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	DYSF	O75923	2080 aa		18.75	■□□□□ 0.59
SRRM1-222	ENST00000596378	MKRN2OS	H3BPM6	223 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	GYPA	P02724	150 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	NBL1	P41271	181 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	SELENOV	P59797	346 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	TCF23	Q7RTU1	214 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	CENPV	Q7Z7K6	275 aa	Predicted RBP	18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	ZNF561	Q8N587	486 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	FAM222B	Q8WU58	562 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	SEBOX	Q9HB31	216 aa	Predicted RBP	18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	CT45A1	Q5HYN5	189 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	FFAR4	Q5NUL3	377 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	STUM	Q69YW2	141 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	ZCCHC24	Q8N2G6	241 aa	Known RBP	18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	CT45A3	Q8NHU0	189 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	GAFA1	Q96PS6	74 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	IL19	Q9UHD0	177 aa		18.74	■□□□□ 0.59
SRRM1-222	ENST00000596378	YLPM1	P49750	1951 aa	Known RBP	18.73	■□□□□ 0.59
SRRM1-222	ENST00000596378	PCP4L1	A6NKN8	68 aa		18.73	■□□□□ 0.59
SRRM1-222	ENST00000596378	WFDC8	Q8IUA0	241 aa		18.73	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms