RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SSBP3Q9BWW4 388 aaPredicted RBP6.55□□□□□ -1.36
VPS39-213ENST00000570062 TMEM133Q9H2Q1 129 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 IFI27L2Q9H2X8 130 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 DCAF16Q9NXF7 216 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 FKBP11Q9NYL4 201 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 WSB1Q9Y6I7 421 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 CREBBPQ92793 2442 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 LOC105371242A0A075B767 164 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 IGHV3-43A0A0B4J1X8 118 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 C19orf84I3L1E1 186 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 J3QR06 171 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 ENSAO43768 121 aaKnown RBP6.54□□□□□ -1.36
VPS39-213ENST00000570062 FOXH1O75593 365 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 TSPAN9O75954 239 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 SCGB1D2O95969 90 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 TFF1P04155 84 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 GAPDHP04406 335 aaKnown RBP6.54□□□□□ -1.36
VPS39-213ENST00000570062 IGHV3-43DP0DP04 118 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 SELLP14151 372 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 EPHA1P21709 976 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 CEACAM3P40198 252 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 ZNF266Q14584 549 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 POU2AF1Q16633 256 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 ZNF833PQ6ZTB9 187 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 TCF23Q7RTU1 214 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 STX12Q86Y82 276 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 PDPNQ86YL7 162 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 TGIF2LYQ8IUE0 185 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 ABHD12Q8N2K0 398 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 ZNF680Q8NEM1 530 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 OR52E5Q8NH55 327 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 OR4A5Q8NH83 315 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 LHFPL5Q8TAF8 219 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 STOML3Q8TAV4 291 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 UBALD1Q8TB05 177 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 SCARB1Q8WTV0 552 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 GPR146Q96CH1 333 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 SMIM8Q96KF7 97 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 CCL19Q99731 98 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 RNF5Q99942 180 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 PRR13Q9NZ81 148 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 CTSZQ9UBR2 303 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 LSM5Q9Y4Y9 91 aaKnown RBP6.54□□□□□ -1.36
VPS39-213ENST00000570062 KPTNQ9Y664 436 aa6.54□□□□□ -1.36
VPS39-213ENST00000570062 ESPL1Q14674 2120 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 SAA2-SAA4A0A096LPE2 208 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 RNF222A6NCQ9 220 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 MPTX1A8MV57 137 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 OOSP1A8MZH6 123 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 SYNGR2O43760 224 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 FCGR3BO75015 233 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 DFFBO76075 338 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 SAA2P0DJI9 122 aaPredicted RBP6.53□□□□□ -1.36
VPS39-213ENST00000570062 HKR1P10072 659 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 OMGP23515 440 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 SSTR2P30874 369 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 LGALS7P47929 136 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 ZNF134P52741 427 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 DLX6P56179 175 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 HBG1P69891 147 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 HBG2P69892 147 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 HOXA4Q00056 320 aaPredicted RBP6.53□□□□□ -1.36
VPS39-213ENST00000570062 IFITM2Q01629 132 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 ZNF273Q14593 569 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 AARDQ4LEZ3 155 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 PRAMEF5Q5TYX0 476 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 NCR3LG1Q68D85 454 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 SP5Q6BEB4 398 aaPredicted RBP6.53□□□□□ -1.36
VPS39-213ENST00000570062 DUX4L9Q6RFH8 374 aaPredicted RBP6.53□□□□□ -1.36
VPS39-213ENST00000570062 CLEC2AQ6UVW9 174 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 C5orf24Q7Z6I8 188 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 ZNF429Q86V71 674 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 BAP18Q8IXM2 172 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 MRPL41Q8IXM3 137 aaKnown RBP6.53□□□□□ -1.36
VPS39-213ENST00000570062 OR2C3Q8N628 320 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 DMBX1Q8NFW5 382 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 OR4A16Q8NH70 328 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 DDB2Q92466 427 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 PIMREGQ9BSJ6 248 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 ZNF471Q9BX82 626 aaPredicted RBP6.53□□□□□ -1.36
VPS39-213ENST00000570062 CLEC7AQ9BXN2 247 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 PARP12Q9H0J9 701 aaKnown RBP6.53□□□□□ -1.36
VPS39-213ENST00000570062 SLC25A32Q9H2D1 315 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 UNKLQ9H9P5 680 aaKnown RBP6.53□□□□□ -1.36
VPS39-213ENST00000570062 PLSCR3Q9NRY6 295 aa6.53□□□□□ -1.36
VPS39-213ENST00000570062 LYRM2Q9NU23 88 aaPredicted RBP6.53□□□□□ -1.36
VPS39-213ENST00000570062 MARCH11A6NNE9 402 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 A8MXK9 166 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 LYNX1G3V0Z9 82 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 H0YIZ8 118 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 CHST1O43916 411 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 SOX15O60248 233 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 RBMXL2O75526 392 aaKnown RBP6.52□□□□□ -1.37
VPS39-213ENST00000570062 KRASP01116 189 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 IGKV1-5P01602 117 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 LYNX1P0DP58 116 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 CCL3L1P16619 93 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 PRTN3P24158 256 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 CDKN1AP38936 164 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 SPCS3P61009 180 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms