RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 SERF1AO75920 110 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 LYZL6O75951 148 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 TOX4O94842 621 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 GNB2P62879 340 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 ARL16Q0P5N6 197 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 TRAT1Q6PIZ9 186 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 ERASQ7Z444 233 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 QTRT1Q9BXR0 403 aaKnown RBP9.69□□□□□ -0.86
CLN3-238ENST00000569430 SNHG12Q9BXW3 62 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 ANAPC10Q9UM13 185 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 WIPI2Q9Y4P8 454 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 PXMP4Q9Y6I8 212 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 ASPMQ8IZT6 3477 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 M0R2Z0 102 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 HAND1O96004 215 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 RFPL3SP0C7P2 107 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 VKORC1L1Q8N0U8 176 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 WDYHV1Q96HA8 205 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 OR2J1Q9GZK6 312 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 KIAA1549LQ6ZVL6 1849 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 INTS1Q8N201 2190 aaKnown RBP9.69□□□□□ -0.86
CLN3-238ENST00000569430 PLCE1Q9P212 2302 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 USF1P22415 310 aaPredicted RBP9.69□□□□□ -0.86
CLN3-238ENST00000569430 TAS2R45P59539 299 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 TEX38Q6PEX7 206 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 Q8IYB0 196 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 CPEB3Q8NE35 698 aaKnown RBP9.69□□□□□ -0.86
CLN3-238ENST00000569430 TRIB1Q96RU8 372 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 TMEM242Q9NWH2 141 aa9.69□□□□□ -0.86
CLN3-238ENST00000569430 PCNX1Q96RV3 2341 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 A0A1W2PR77 199 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 ODAMA1E959 279 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 ABHD12Q8N2K0 398 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 MBD3L1Q8WWY6 194 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 LSM10Q969L4 123 aaKnown RBP9.68□□□□□ -0.86
CLN3-238ENST00000569430 HS3ST6Q96QI5 342 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 DERL1Q9BUN8 251 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 SH2D2AQ9NP31 389 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 IFNL4K9M1U5 179 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 NHLRC2Q8NBF2 726 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 OR2Y1Q8NGV0 311 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 NABP1Q96AH0 204 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 NPCDR1Q9BY65 106 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 CXorf1O96002 111 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 HBZP02008 142 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 SRIP30626 198 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 MFAP2P55001 183 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 RPL31P62899 125 aaKnown RBP9.68□□□□□ -0.86
CLN3-238ENST00000569430 FAM19A2Q8N3H0 131 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 FAM216AQ8WUB2 273 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 TMEM106BQ9NUM4 274 aa9.68□□□□□ -0.86
CLN3-238ENST00000569430 TECRQ9NZ01 308 aaKnown RBP9.68□□□□□ -0.86
CLN3-238ENST00000569430 FREM1Q5H8C1 2179 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 CSN3P07498 182 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 ADMP35318 185 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 HIST3H3Q16695 136 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 DOLPP1Q86YN1 238 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 LYG1Q8N1E2 194 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 SCO2A0A1W2PP80 73 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 A0A1W2PQM1 296 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A10PA6NDY2 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A18PA6NE21 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A16PA6NEW6 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A20PA6NIJ5 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A8PA6NJQ4 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A7PA6NKC0 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A22PA8MWA6 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A12PA8MX19 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A5PA8MXJ8 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A23PA8MXZ1 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A15PP0C7V4 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A13PP0C7W8 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A14PP0C7W9 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 FAM90A24PP0C7X0 464 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 OTX1P32242 354 aaPredicted RBP9.67□□□□□ -0.86
CLN3-238ENST00000569430 GNG10P50151 68 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 PQLC2Q6ZP29 291 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 MMD2Q8IY49 270 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 SEMA5BQ9P283 1151 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 SIT1Q9Y3P8 196 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 PCDH15Q96QU1 1955 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 LRRC30A6NM36 301 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 CHEK1O14757 476 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 ENSAO43768 121 aaKnown RBP9.67□□□□□ -0.86
CLN3-238ENST00000569430 CD46P15529 392 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 MAGEA5P43359 124 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 LCN2P80188 198 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 WDR73Q6P4I2 378 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 ZIC4Q8N9L1 334 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 BEND2Q8NDZ0 799 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 CORO2AQ92828 525 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 SIGLEC12Q96PQ1 595 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 TMEM208Q9BTX3 173 aa9.67□□□□□ -0.86
CLN3-238ENST00000569430 LAMTOR5O43504 91 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 VENTXO95231 258 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 RND2P52198 227 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 MMDQ15546 238 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 OR4B1Q8NGF8 309 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 SLC35E1Q96K37 410 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 SLC45A2Q9UMX9 530 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms