RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ETV7Q9Y603 341 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 C5P01031 1676 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 TRBV4-1A0A0J9YWV2 114 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 A0A1B0GV50 99 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 DUXBA0A1W2PPF3 345 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 A0A1W2PPR1 153 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 A0A1W2PPV9 198 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 TMEM89A2RUT3 159 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 C7orf71A4D174 169 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 TMEM235A6NFC5 223 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 SMIM9A6NGZ8 99 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZNF705FA8MVS1 300 aaPredicted RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 SNURFLB1AK76 121 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 C21orf140B9A014 251 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZNF878C9JN71 531 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 C17orf112F2Z3M2 114 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 TMEM250H0YL14 139 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 H3BQ15 152 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 M0R1X1 148 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 MLNRO43193 412 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZNF354AO60765 605 aaPredicted RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 NPIPB7O75200 414 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 FCN3O75636 299 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 TIMP1P01033 207 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 MAS1P04201 325 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 CTSDP07339 412 aaPredicted RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZNF286BP0CG31 522 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZNF705DP0CH99 300 aaPredicted RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZNF705BP0CI00 300 aaPredicted RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 AKAIN1P0CW23 69 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 CT45A10P0DMU9 189 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ATP1B2P14415 290 aaPredicted RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 EDNRAP25101 427 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 CD34P28906 385 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 TSPOP30536 169 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 SRP14P37108 136 aaKnown RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 CTRLP40313 264 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 PPICP45877 212 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 XGP55808 180 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ATP5J2P56134 94 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 H2BFSP57053 126 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 OR1D5P58170 312 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 GRB2P62993 217 aaKnown RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 HLA-DRB3P79483 266 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 MMDQ15546 238 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZIC1Q15915 447 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 DUSP5Q16690 384 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 MS4A18Q3C1V0 323 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ATP6AP1LQ52LC2 224 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 TCEAL5Q5H9L2 206 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 UBE2NLQ5JXB2 153 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 FAM182AQ5T1J6 154 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 UTF1Q5T230 341 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 UFSP1Q6NVU6 142 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 TRIM40Q6P9F5 258 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZNF547Q8IVP9 402 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 FAM219AQ8IW50 185 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ARIH2OSQ8N7S6 290 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 TMEM99Q8N816 258 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZDHHC22Q8N966 263 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 OR52E2Q8NGJ4 325 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 OR1N2Q8NGR9 330 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 OR2G3Q8NGZ4 309 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 OR4F5Q8NH21 305 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 OR4X1Q8NH49 305 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 OR2AE1Q8NHA4 323 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 PPTC7Q8NI37 304 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 SYNPRQ8TBG9 265 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 LRRC15Q8TF66 581 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 MRPL24Q96A35 216 aaKnown RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 ZNF681Q96N22 645 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 OXGR1Q96P68 337 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 TRIB3Q96RU7 358 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 CDX2Q99626 313 aaPredicted RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 ADAT1Q9BUB4 502 aaKnown RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 DERL1Q9BUN8 251 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 CHIAQ9BZP6 476 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 EIF5A2Q9GZV4 153 aaKnown RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 DEFB129Q9H1M3 183 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ST20Q9HBF5 79 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 POPDC3Q9HBV1 291 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 UBE2TQ9NPD8 197 aaPredicted RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 GNG12Q9UBI6 72 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 SLC2A6Q9UGQ3 507 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 NXT1Q9UKK6 140 aaKnown RBP2.75□□□□□ -1.97
VPS35-203ENST00000562420 TOGARAM1Q9Y4F4 1720 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 THSD7AQ9UPZ6 1657 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 ANKRD31Q8N7Z5 1873 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 DOCK2Q92608 1830 aa2.75□□□□□ -1.97
VPS35-203ENST00000562420 DUOX1Q9NRD9 1551 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 BAZ2AQ9UIF9 1905 aaKnown RBP2.74□□□□□ -1.97
VPS35-203ENST00000562420 DOCK1Q14185 1865 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 A0A087WUU8 490 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 A0A087WX48 190 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 TRAV14DV4A0A0A6YYC5 116 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 TRAV1-1A0A0B4J248 108 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 PIGBOS1A0A0B4J2F0 54 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 C5orf49A4QMS7 147 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 TMEM212A6NML5 194 aa2.74□□□□□ -1.97
VPS35-203ENST00000562420 E5RGE8 158 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms