RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KCNAB3O43448 404 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 ACAA1P09110 424 aaPredicted RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 CCL1P22362 96 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 S100A7P31151 101 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 PPT1P50897 306 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 LOXL3P58215 753 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 UBE2G2P60604 165 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 SLC38A11Q08AI6 406 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 PATZ1Q9HBE1 687 aaKnown RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 RABAC1Q9UI14 185 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 RPUSD1Q9UJJ7 312 aaKnown RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 OR51B2Q9Y5P1 312 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 ANKRD17O75179 2603 aaKnown RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 HPRT1P00492 218 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 SLC35B1P78383 322 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 FXYD3Q14802 87 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 DUX4L9Q6RFH8 374 aaPredicted RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 OR2C3Q8N628 320 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 OR4C13Q8NGP0 309 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 PRNDQ9UKY0 176 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 MUC22E2RYF6 1773 aaPredicted RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 CGAP01215 116 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 HTN1P15515 57 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 RPL19P84098 196 aaKnown RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 GAMTQ14353 236 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 RTN4RL2Q86UN3 420 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 MRPL20Q9BYC9 149 aaKnown RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 CLEC5AQ9NY25 188 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 RCC2Q9P258 522 aaKnown RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 MARCH11A6NNE9 402 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 CTDSPLO15194 276 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 IGHV3-11P01762 117 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 CXCL3P19876 107 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 NPY1RP25929 384 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 IFITM3Q01628 133 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 FAM74A1Q5RGS3 127 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 OR8I2Q8N0Y5 310 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 KCNRGQ8N5I3 272 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 OR2T10Q8NGZ9 312 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 CLDND2Q8NHS1 167 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 SPSB4Q96A44 273 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 DAZAP1Q96EP5 407 aaKnown RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 SLC25A32Q9H2D1 315 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 TMEM133Q9H2Q1 129 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 SH2D7A6NKC9 451 aaPredicted RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 GSTZ1O43708 216 aaPredicted RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 CCKARP32238 428 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 HIST1H3AP68431 136 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 SURF2Q15527 256 aaPredicted RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 CXorf66Q5JRM2 361 aaPredicted RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 HIST2H3PS2Q5TEC6 136 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 TMEM200BQ69YZ2 307 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 DHRS7BQ6IAN0 325 aaPredicted RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 ZNF788Q6ZQV5 615 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 HIST2H3AQ71DI3 136 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 MMD2Q8IY49 270 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 ZNF645Q8N7E2 425 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 ZBTB34Q8NCN2 500 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 ANGPTL6Q8NI99 470 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 RNF138Q8WVD3 245 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 CORO2AQ92828 525 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 LURAP1Q96LR2 239 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 TMEM140Q9NV12 185 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 TEP1Q99973 2627 aaKnown RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 SETXQ7Z333 2677 aaKnown RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 IGHV3-49A0A0A0MS15 119 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 MGST1P10620 155 aaKnown RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 BLOC1S1P78537 153 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 MEF2CQ06413 473 aaPredicted RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 C22orf34Q6ZV56 151 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 TMUB2Q71RG4 321 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 MRPL30Q8TCC3 161 aaKnown RBP7.69□□□□□ -1.18
VPS39-205ENST00000562258 BLNKQ8WV28 456 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 RAB40CQ96S21 281 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 SSX3Q99909 188 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 PLEKHA2Q9HB19 425 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 RAB18Q9NP72 206 aa7.69□□□□□ -1.18
VPS39-205ENST00000562258 IGKV1D-17A0A075B6S4 117 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 IGKV1D-8A0A087WSZ0 117 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 J3KRW8 73 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 IGHV3-23P01764 117 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 H2AFB1P0C5Y9 115 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 OR10J4P0C629 311 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 DSCR9P59020 149 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 VAX1Q5SQQ9 334 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 OR1B1Q8NGR6 318 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 ZNRD1Q9P1U0 126 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 F8W036 122 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 TIMM23O14925 209 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 MPC2O95563 127 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 DVL1P1P54792 670 aaPredicted RBP7.68□□□□□ -1.18
VPS39-205ENST00000562258 GUCA2BQ16661 112 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 COLCA1Q6ZS62 124 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 DYNLRB2Q8TF09 96 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 SAT2Q96F10 170 aaPredicted RBP7.68□□□□□ -1.18
VPS39-205ENST00000562258 MARVELD1Q9BSK0 173 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 KCNIP2Q9NS61 270 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 GNG13Q9P2W3 67 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 C17orf98A8MV24 154 aa7.68□□□□□ -1.18
VPS39-205ENST00000562258 H3BUX3 64 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms