RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	JOSD1	Q15040	202 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	UAP1	Q16222	522 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	PLPPR5	Q32ZL2	321 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF791	Q3KP31	576 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC36A2	Q495M3	483 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	PABPC1L2A	Q5JQF8	200 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	C1orf194	Q5T5A4	169 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	OR10K2	Q6IF99	312 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	AGTRAP	Q6RW13	159 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	SBSN	Q6UWP8	590 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	GLT6D1	Q7Z4J2	308 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ATP5L2	Q7Z4Y8	100 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	LRRC34	Q8IZ02	419 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	DYNAP	Q8N1N2	210 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC35F6	Q8N357	371 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM251	Q8N6I4	163 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	NATD1	Q8N6N6	113 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	DAND5	Q8N907	189 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	CNEP1R1	Q8N9A8	125 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	CCDC112	Q8NEF3	446 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	OR4X1	Q8NH49	305 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	SGMS2	Q8NHU3	365 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	JOSD2	Q8TAC2	188 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	LHFPL5	Q8TAF8	219 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	DCANP1	Q8TF63	244 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	CYGB	Q8WWM9	190 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	CMTM5	Q96DZ9	223 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	SFRP2	Q96HF1	295 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF625	Q96I27	306 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC35G5	Q96KT7	338 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	C7orf50	Q9BRJ6	194 aa	Known RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	LLPH	Q9BRT6	129 aa	Known RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	DCUN1D5	Q9BTE7	237 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	TIMM21	Q9BVV7	248 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	NDEL1	Q9GZM8	345 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	DERL2	Q9GZP9	239 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	NSRP1	Q9H0G5	558 aa	Known RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM222	Q9H0R3	208 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	CYSTM1	Q9H1C7	97 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	VCX3B	Q9H321	246 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	SLC2A9	Q9NRM0	540 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	PLEKHJ1	Q9NW61	149 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF469	Q96JG9	3925 aa	Predicted RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	DOCK10	Q96BY6	2186 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	ARHGAP32	A7KAX9	2087 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	DSCAM	O60469	2012 aa		0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	DICER1	Q9UPY3	1922 aa	Known RBP	0.25	□□□□□ -2.37
SPG11-222	ENST00000560435	GBF1	Q92538	1859 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	NYNRIN	Q9P2P1	1898 aa	Known RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CHD2	O14647	1828 aa	Known RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	SLX4	Q8IY92	1834 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	DISP1	Q96F81	1524 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	PXDNL	A1KZ92	1463 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	FN1	P02751	2386 aa	Known RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	ABCC11	Q96J66	1382 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	MAP3K5	Q99683	1374 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	KIF15	Q9NS87	1388 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	TMSB15B	A0A087X1C1	80 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435		A0A0A6YYH2	397 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	TRAV41	A0A0B4J266	112 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435		A6NJ64	397 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	GOLGA8K	D6RF30	607 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	GOLGA8M	H3BSY2	632 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CXCR6	O00574	342 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CETN3	O15182	167 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	PLA2G10	O15496	165 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	ATP6V1G2	O95670	118 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	GPX1	P07203	203 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF705D	P0CH99	300 aa	Predicted RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF705B	P0CI00	300 aa	Predicted RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	ALOX5AP	P20292	161 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CCL1	P22362	96 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CD40LG	P29965	261 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	PEBP1	P30086	187 aa	Known RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	GABRA2	P47869	451 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	FXYD7	P58549	80 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	BTN3A2	P78410	334 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	DMTN	Q08495	405 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	MIA	Q16674	131 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	LRRC75B	Q2VPJ9	315 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	ACSM3	Q53FZ2	586 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	HSP90B2P	Q58FF3	399 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	TNFAIP8L3	Q5GJ75	292 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	FAM78B	Q5VT40	261 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CST9	Q5W186	159 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	SFXN4	Q6P4A7	337 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	LYZL1	Q6UWQ5	148 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	FAM151B	Q6UXP7	276 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	CCDC121	Q6ZUS5	278 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	ZNF550	Q7Z398	422 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	LHFPL1	Q86WI0	220 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	FUNDC1	Q8IVP5	155 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	FAM9C	Q8IZT9	166 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	DEFB119	Q8N690	84 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	PACRGL	Q8N7B6	248 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	C9orf163	Q8N9P6	203 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	TMEM161B	Q8NDZ6	487 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	GPR32P1	Q8NGA4	272 aa		0.24	□□□□□ -2.37
SPG11-222	ENST00000560435	OR4X2	Q8NGF9	303 aa		0.24	□□□□□ -2.37

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