RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 C1orf194Q5T5A4 169 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 FAM78BQ5VT40 261 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 TRAT1Q6PIZ9 186 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 PRR7Q8TB68 274 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 GATAD1Q8WUU5 269 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 FKBP11Q9NYL4 201 aa13.64□□□□□ -0.23
SHMT2-232ENST00000557487 CHD3Q12873 2000 aaKnown RBP13.64□□□□□ -0.23
SHMT2-232ENST00000557487 ZNHIT1O43257 154 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 SELLP14151 372 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 OR10J1P30954 320 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 MAGEA5P43359 124 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 PMP22Q01453 160 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 ZNF124Q15973 351 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 TMEM251Q8N6I4 163 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 OR1L1Q8NH94 360 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 NEU1Q99519 415 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 TMEM204Q9BSN7 226 aa13.63□□□□□ -0.23
SHMT2-232ENST00000557487 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-232ENST00000557487 A0A0U1RQK1 487 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 A0A1W2PPV4 95 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 ZNF320A2RRD8 509 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 CDIPTO14735 213 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 TCAPO15273 167 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 SMPD2O60906 423 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 HBZP02008 142 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 NPPCP23582 126 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 CD1BP29016 333 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 OPRK1P41145 380 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 UBE2NP61088 152 aaKnown RBP13.62□□□□□ -0.23
SHMT2-232ENST00000557487 YPEL3P61236 119 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-232ENST00000557487 GNB1P62873 340 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 BTNL3Q6UXE8 466 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 LOXL2Q9Y4K0 774 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 KIR2DL5BA0A0G2JN68 375 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 KIR2DL5BA0A0G2JPC4 375 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 MDFIC2A0A1B0GVS7 189 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 C17orf98A8MV24 154 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 CHRNA7P36544 502 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 SOX8P57073 446 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 TIPARPQ7Z3E1 657 aaKnown RBP13.62□□□□□ -0.23
SHMT2-232ENST00000557487 DMRTC2Q8IXT2 367 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-232ENST00000557487 KIR2DL5AQ8N109 375 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 DEFB124Q8NES8 71 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 C5orf30Q96GV9 206 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 FRYLO94915 3013 aa13.62□□□□□ -0.23
SHMT2-232ENST00000557487 CNTRLQ7Z7A1 2325 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 C15orf62A8K5M9 175 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 FAM166BA8MTA8 275 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 RBMXL2O75526 392 aaKnown RBP13.61□□□□□ -0.23
SHMT2-232ENST00000557487 TNFSF15O95150 251 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 ACP1P24666 158 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 TGIF2LXQ8IUE1 241 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 Q8N7P7 452 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 OR52E5Q8NH55 327 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 UBALD1Q8TB05 177 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 SFRP2Q96HF1 295 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 OR51B6Q9H340 312 aa13.61□□□□□ -0.23
SHMT2-232ENST00000557487 IFNL4K9M1U5 179 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 M0QZK8 103 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 M0R143 59 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 TMPRSS3P57727 454 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 BRWD1-AS2P59051 145 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 PAFAH1B2P68402 229 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 SPATA46Q5T0L3 261 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 ZNF808Q8N4W9 903 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-232ENST00000557487 OR52L2PQ8NGH6 319 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 ZDHHC16Q969W1 377 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 ELOVL5Q9NYP7 299 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 NAGKQ9UJ70 344 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 KLF13Q9Y2Y9 288 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-232ENST00000557487 CEP250Q9BV73 2442 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 PSPNO60542 156 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 CXorf1O96002 111 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 ADH4P08319 380 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 SELENOTP62341 195 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 TRIP6Q15654 476 aaKnown RBP13.6□□□□□ -0.23
SHMT2-232ENST00000557487 CLEC12BQ2HXU8 276 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 PDLIM3Q53GG5 364 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-232ENST00000557487 CST9LP1Q5W188 147 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 TUBG2Q9NRH3 451 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 LY96Q9Y6Y9 160 aa13.6□□□□□ -0.23
SHMT2-232ENST00000557487 MARCH11A6NNE9 402 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 NDUFB4O95168 129 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 SCGB1D1O95968 90 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 SNRPCP09234 159 aaKnown RBP13.59□□□□□ -0.23
SHMT2-232ENST00000557487 ESDP10768 282 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 CD82P27701 267 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 HTD2P86397 168 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 TGFBR3Q03167 851 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 SPRY4Q9C004 299 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 OR2J1Q9GZK6 312 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 KIAA2026Q5HYC2 2103 aa13.59□□□□□ -0.23
SHMT2-232ENST00000557487 C21orf140B9A014 251 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 C3orf80F5H4A9 247 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 KLRC4-KLRK1H3BQV0 150 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 OR4A8P0C604 315 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 STAG3L2P0CL84 134 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 STAG3L3P0CL85 134 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 KITLGP21583 273 aa13.58□□□□□ -0.23
SHMT2-232ENST00000557487 SGMS2Q8NHU3 365 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms