RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 C20orf196Q8IYI0 205 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 OR2T10Q8NGZ9 312 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 IL22RA2Q969J5 263 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 TECTBQ96PL2 329 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 ATP5SQ99766 215 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 VAMP8Q9BV40 100 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 OR51I2Q9H344 312 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 RBKSQ9H477 322 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 MOB1AQ9H8S9 216 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 SLC7A10Q9NS82 523 aa6.46□□□□□ -1.38
LIMA1-216ENST00000552909 YLPM1P49750 1951 aaKnown RBP6.46□□□□□ -1.38
LIMA1-216ENST00000552909 DEFB108AA8MXU0 73 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 CCL25O15444 150 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 SRP14P37108 136 aaKnown RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 UBE2NP61088 152 aaKnown RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 CST9LP1Q5W188 147 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 SLC25A24Q6NUK1 477 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 KCNIP4Q6PIL6 250 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 LCN15Q6UWW0 184 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 C6orf201Q7Z4U5 140 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 CCDC71LQ8N9Z2 235 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 OR5D18Q8NGL1 313 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 ORAOV1Q8WV07 137 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 APH1AQ96BI3 265 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF837Q96EG3 531 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 HS3ST6Q96QI5 342 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 SPIN2AQ99865 258 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 SPIN2BQ9BPZ2 258 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 TM2D1Q9BX74 207 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 ULBP2Q9BZM5 246 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 ELL3Q9HB65 397 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 PLEKHJ1Q9NW61 149 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 PAM16Q9Y3D7 125 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 PRRC2AP48634 2157 aaKnown RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 HEATR1Q9H583 2144 aaKnown RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 RTTNQ86VV8 2226 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 A0A1W2PN81 502 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 DHHO43323 396 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 KBTBD11O94819 623 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 NXPH2O95156 264 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 IFNA5P01569 189 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 CHRNA7P36544 502 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF133P52736 654 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 RPL23P62829 140 aaKnown RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 SRPXP78539 464 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 MRPS34P82930 218 aaKnown RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 PRSS8Q16651 343 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 SMIM15Q7Z3B0 74 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM256Q8N2U0 113 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 MBD3L1Q8WWY6 194 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 MOB3AQ96BX8 217 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 ANAPC16Q96DE5 110 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 ABHD14BQ96IU4 210 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 FAM71F1Q96KD3 344 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 CIB3Q96Q77 187 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 HDHD3Q9BSH5 251 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-216ENST00000552909 MAGT1Q9H0U3 335 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 PLK3Q9H4B4 646 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM106BQ9NUM4 274 aa6.45□□□□□ -1.38
LIMA1-216ENST00000552909 USF3Q68DE3 2245 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 A0A1W2PR80 420 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 YPEL1O60688 119 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 COX5AP20674 150 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 CRYGSP22914 178 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 LOXP28300 417 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-216ENST00000552909 FGF8P55075 233 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-216ENST00000552909 LCN2P80188 198 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF154Q13106 437 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 KISS1Q15726 138 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 ATP6V1FQ16864 119 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 TDRG1Q3Y452 100 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 TPTE2P1Q5T6R2 138 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 BHLHA15Q7RTS1 189 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-216ENST00000552909 C1QL2Q7Z5L3 287 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 WFDC8Q8IUA0 241 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 OR11L1Q8NGX0 322 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 CMTM2Q8TAZ6 248 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 MRGPRDQ8TDS7 321 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM45BQ96B21 275 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 YPEL2Q96QA6 119 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 RPRMQ9NS64 109 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 POLR1DQ9Y2S0 133 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 TRAPPC1Q9Y5R8 145 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 ACANP16112 2415 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 ZFHX3Q15911 3703 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 IGKV1-9A0A0C4DH69 117 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-216ENST00000552909 LILRA1O75019 489 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 NDUFB8O95169 186 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF205O95201 554 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 PLAUP00749 431 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 OR5G3P0C626 314 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM11P17152 192 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 TPPP2P59282 170 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 PAFAH1B2P68402 229 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 RNF151Q2KHN1 245 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM41BQ5BJD5 291 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 C10orf128Q5T292 105 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 FAM57BQ71RH2 274 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 ODF3L1Q8IXM7 274 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms