RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PINX1Q96BK5 328 aaKnown RBP4.65□□□□□ -1.66
LIMA1-215ENST00000552823 ATP5SQ99766 215 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 GINS3Q9BRX5 216 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 SEC11CQ9BY50 192 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 Q9UFV3 132 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-215ENST00000552823 CD40P25942 277 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 P2RY6Q15077 328 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 MSMO1Q15800 293 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 FFAR4Q5NUL3 377 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 NCMAPQ5T1S8 102 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 ZNF880Q6PDB4 577 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 C1orf229Q6ZS94 237 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-215ENST00000552823 ZNF429Q86V71 674 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 ZNF295-AS1Q8N0V1 137 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 LRTM2Q8N967 370 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 OR10P1Q8NGE3 313 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 S1PR3Q99500 378 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 RAXQ9Y2V3 346 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 STRAPQ9Y3F4 350 aaKnown RBP4.65□□□□□ -1.67
LIMA1-215ENST00000552823 MYO9AB2RTY4 2548 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 DYSFO75923 2080 aa4.65□□□□□ -1.67
LIMA1-215ENST00000552823 MAP1LC3B2A6NCE7 125 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 DPRXA6NFQ7 191 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 MARCH11A6NNE9 402 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 C16orf97H3BN30 126 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 H3BQ15 152 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 K7N7A8 449 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 OR2C1O95371 312 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 MRPS11P82912 194 aaKnown RBP4.64□□□□□ -1.67
LIMA1-215ENST00000552823 TNFRSF9Q07011 255 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 PRR31Q5SQ13 230 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 ASPHD1Q5U4P2 390 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 WDR25Q64LD2 544 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-215ENST00000552823 UQCC3Q6UW78 93 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 Q6ZS92 163 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 SLC16A13Q7RTY0 426 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 EIF4E3Q8N5X7 224 aaKnown RBP4.64□□□□□ -1.67
LIMA1-215ENST00000552823 OR4F5Q8NH21 305 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 PPP1R35Q8TAP8 253 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 RAB39BQ96DA2 213 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 OR4F4Q96R69 305 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 MAP1LC3BQ9GZQ8 125 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 SLC35B3Q9H1N7 401 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-215ENST00000552823 CALYQ9NYX4 217 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 A0A1B0GU03 582 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 PGPEP1LA6NFU8 196 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 A8MXE2 369 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 PROP1O75360 226 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 PITX3O75364 302 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 CGAP01215 116 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 IGHV1-46P01743 117 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 CRYABP02511 175 aaKnown RBP4.64□□□□□ -1.67
LIMA1-215ENST00000552823 COX5AP20674 150 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 COX7A1P24310 79 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 MDH2P40926 338 aaKnown RBP4.64□□□□□ -1.67
LIMA1-215ENST00000552823 BRWD1-AS2P59051 145 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 TAS2R30P59541 319 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 ERVK-16P61578 105 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 HBG1P69891 147 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 HBG2P69892 147 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 DIAPH2-AS1Q14236 149 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 MIC13Q5XKP0 118 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 SPSB3Q6PJ21 355 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 LYPD2Q6UXB3 125 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 RBMS3Q6XE24 437 aaKnown RBP4.64□□□□□ -1.67
LIMA1-215ENST00000552823 ZNF525Q8N782 197 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 ZNF645Q8N7E2 425 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 Q8NFD4 153 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 RAB40CQ96S21 281 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 SMCO4Q9NRQ5 59 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 DOK5Q9P104 306 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 RNF7Q9UBF6 113 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 RNF115Q9Y4L5 304 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 KPTNQ9Y664 436 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 TMEM210A6NLX4 147 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 C1orf196B1AJZ1 125 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 RRHO14718 337 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 IGKV1D-33P01593 117 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 IGKV1-33P01594 117 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 REG1AP05451 166 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 CD5P06127 495 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 SLC25A6P12236 298 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 CD24P25063 80 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 GLRXP35754 106 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 NDUFA6P56556 154 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 DLK1P80370 383 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 TLE4Q04727 773 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 RTP5Q14D33 572 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 HMGN3Q15651 99 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 C10orf55Q5SWW7 151 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 ACSM6Q6P461 480 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 RCC1LQ96I51 464 aaKnown RBP4.64□□□□□ -1.67
LIMA1-215ENST00000552823 RHOVQ96L33 236 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 GCM1Q9NP62 436 aa4.64□□□□□ -1.67
LIMA1-215ENST00000552823 LRRC30A6NM36 301 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 PAGE4O60829 102 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 DFFBO76075 338 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 LY6DQ14210 128 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms