RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 CLDN34H7C241 214 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 OPN1MWP04001 364 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 OPN1MW2P0DN77 364 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 OPN1MW3P0DN78 364 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 EGR1P18146 543 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 ADCYAP1P18509 176 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 UBE2G2P60604 165 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 KCNIP4Q6PIL6 250 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 ZDHHC16Q969W1 377 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 MALSU1Q96EH3 234 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 SLX1AQ9BQ83 275 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 KBTBD11-OT1A0A1B0GTJ5 212 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 TMEM50AO95807 157 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 RAB5AP20339 215 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 ZNF506Q5JVG8 444 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 Q6ZPA2 131 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 RPRMLQ8N4K4 120 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 NEIL1Q96FI4 390 aaPredicted RBP9□□□□□ -0.97
CLIP1-213ENST00000540338 ZNF251Q9BRH9 671 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 SCNM1Q9BWG6 230 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 QTRT1Q9BXR0 403 aaKnown RBP9□□□□□ -0.97
CLIP1-213ENST00000540338 HES4Q9HCC6 221 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 MANBALQ9NQG1 85 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 HSPB7Q9UBY9 170 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 B4DEV8 164 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 NPY1RP25929 384 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 UCNP55089 124 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 TMEM30BQ3MIR4 351 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 ASCL5Q7RTU5 278 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 SLC35E3Q7Z769 313 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 VKORC1L1Q8N0U8 176 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 DKK4Q9UBT3 224 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 NDUFA6P56556 154 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 CCL20P78556 96 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 TIMD4Q96H15 378 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 RCC1LQ96I51 464 aaKnown RBP8.99□□□□□ -0.97
CLIP1-213ENST00000540338 ZNF714Q96N38 554 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 TIMM9Q9Y5J7 89 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 RFNGQ9Y644 331 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 IGKV1D-17A0A075B6S4 117 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 IGHV1-46P01743 117 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 TCF15Q12870 199 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 FAM216BQ8N7L0 139 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 SSUH2Q9Y2M2 353 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 XIRP2A4UGR9 3374 aa8.99□□□□□ -0.97
CLIP1-213ENST00000540338 DUTP33316 252 aaKnown RBP8.98□□□□□ -0.97
CLIP1-213ENST00000540338 SNRPEP62304 92 aaKnown RBP8.98□□□□□ -0.97
CLIP1-213ENST00000540338 BSPH1Q075Z2 132 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 DOLPP1Q86YN1 238 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 SPACA3Q8IXA5 215 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 SIRT7Q9NRC8 400 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 RNF115Q9Y4L5 304 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 FAM215AQ9Y5M1 114 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 J3QR06 171 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 MPDU1O75352 247 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 VMA21Q3ZAQ7 101 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 STUMQ69YW2 141 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 C11orf53Q8IXP5 236 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 KDF1Q8NAX2 398 aaPredicted RBP8.98□□□□□ -0.97
CLIP1-213ENST00000540338 PRSS33Q8NF86 280 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 LRFN3Q9BTN0 628 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 CISD1Q9NZ45 108 aaKnown RBP8.98□□□□□ -0.97
CLIP1-213ENST00000540338 TCF19Q9Y242 345 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 A0A0U1RQK1 487 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 C17orf100A8MU93 164 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 TM4SF5O14894 197 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 TGOLN2O43493 480 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 CGAP01215 116 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 SRP19P09132 144 aaKnown RBP8.98□□□□□ -0.97
CLIP1-213ENST00000540338 FBP1P09467 338 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 PAX9P55771 341 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 TMPRSS3P57727 454 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 HSPE1P61604 102 aaKnown RBP8.98□□□□□ -0.97
CLIP1-213ENST00000540338 HOXA4Q00056 320 aaPredicted RBP8.98□□□□□ -0.97
CLIP1-213ENST00000540338 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.98□□□□□ -0.97
CLIP1-213ENST00000540338 NAT8Q9UHE5 227 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 APC2O95996 2303 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 MDFIC2A0A1B0GVS7 189 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 IGKV1-39P01597 117 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 IGKV1D-39P04432 117 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 SLC24A4Q8NFF2 622 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 VSTM2AQ8TAG5 236 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 FAM216AQ8WUB2 273 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 P2RX4Q99571 388 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 NPVFQ9HCQ7 196 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 OR51B2Q9Y5P1 312 aa8.98□□□□□ -0.97
CLIP1-213ENST00000540338 LOC102723971A0A1B0GUV8 181 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 CTRB1P17538 263 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 CTRB2Q6GPI1 263 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 CA5BP1Q8WTZ4 195 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 HARBI1Q96MB7 349 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 PAGE4O60829 102 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 EIF3GO75821 320 aaKnown RBP eCLIP8.97□□□□□ -0.97
CLIP1-213ENST00000540338 TAS2R45P59539 299 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 RHOBP62745 196 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 OR13D1Q8NGV5 346 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 CLDND2Q8NHS1 167 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 SSMEM1Q8WWF3 244 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 RAB24Q969Q5 203 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 FLYWCH2Q96CP2 140 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms