RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ZNF561Q8N587 486 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 Q8NFD4 153 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 MBD3L2Q8NHZ7 208 aaPredicted RBP8.49□□□□□ -1.05
MCF2-209ENST00000520602 ZDHHC8Q9ULC8 765 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 CARHSP1Q9Y2V2 147 aaKnown RBP8.49□□□□□ -1.05
MCF2-209ENST00000520602 LOC105371267A0A1B0GV96 52 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 OR7C2O60412 319 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 TMEM41BQ5BJD5 291 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 Q6ZPA2 131 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 GCSAMQ8N6F7 178 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 JPT1Q9UK76 154 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 EXPH5Q8NEV8 1989 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 CPAMD8Q8IZJ3 1885 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 TRBV6-6A0A0A6YYG2 114 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 A8MXE2 369 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 ADCYAP1P18509 176 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 ERHP84090 104 aaKnown RBP8.49□□□□□ -1.05
MCF2-209ENST00000520602 SERF2P84101 59 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 SPACA3Q8IXA5 215 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 RBMXL3Q8N7X1 1067 aaKnown RBP8.49□□□□□ -1.05
MCF2-209ENST00000520602 C22orf15Q8WYQ4 148 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 MS4A5Q9H3V2 200 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 TMEM140Q9NV12 185 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 AURKAIP1Q9NWT8 199 aaPredicted RBP8.49□□□□□ -1.05
MCF2-209ENST00000520602 CFAP54Q96N23 3096 aa8.49□□□□□ -1.05
MCF2-209ENST00000520602 KIAA1324LA8MWY0 1029 aaPredicted RBP8.48□□□□□ -1.05
MCF2-209ENST00000520602 SRRM5B3KS81 715 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 PAGE4O60829 102 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 APELAP0DMC3 54 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 IL3RAP26951 378 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 CD1BP29016 333 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 HES1Q14469 280 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 MOB3BQ86TA1 216 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 LINC01560Q8TB33 94 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 NANPQ8TBE9 248 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 PTPRQQ9UMZ3 2332 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 COL5A1P20908 1838 aaPredicted RBP8.48□□□□□ -1.05
MCF2-209ENST00000520602 C9JQL5 133 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 FAM90A26D6RGX4 464 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 ERVK11-1P61568 191 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 TCF15Q12870 199 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 C15orf54Q8N8G6 183 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 SERTAD4Q9NUC0 356 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 YLPM1P49750 1951 aaKnown RBP8.48□□□□□ -1.05
MCF2-209ENST00000520602 CELSR3Q9NYQ7 3312 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 IGHV3-72A0A0B4J1Y9 119 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 ATXN7O15265 892 aaPredicted RBP8.48□□□□□ -1.05
MCF2-209ENST00000520602 BCL2P10415 239 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 THBS3P49746 956 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 ZNF585BQ52M93 769 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 KHDC3LQ587J8 217 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 MBNL2Q5VZF2 373 aaKnown RBP8.48□□□□□ -1.05
MCF2-209ENST00000520602 DOLPP1Q86YN1 238 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 RCC1LQ96I51 464 aaKnown RBP8.48□□□□□ -1.05
MCF2-209ENST00000520602 ADTRPQ96IZ2 230 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 SLC35E1Q96K37 410 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 HARBI1Q96MB7 349 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 TMEM204Q9BSN7 226 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 WDR61Q9GZS3 305 aaKnown RBP8.48□□□□□ -1.05
MCF2-209ENST00000520602 TMPRSS5Q9H3S3 457 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 KCNIP2Q9NS61 270 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 VAX2Q9UIW0 290 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 A0A1W2PPQ1 181 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 A0A1W2PRD5 423 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 A0A1W2PRF3 423 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 A0A1W2PRM7 423 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 J3QR06 171 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 K7N7A8 449 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 NPY1RP25929 384 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 KIR2DS2P43631 304 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 RAB4BP61018 213 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 MORN2Q502X0 79 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 ZNF525Q8N782 197 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 PRSS33Q8NF86 280 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 SNRNP40Q96DI7 357 aaKnown RBP8.48□□□□□ -1.05
MCF2-209ENST00000520602 MALSU1Q96EH3 234 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 RPH3ALQ9UNE2 315 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 SSUH2Q9Y2M2 353 aa8.48□□□□□ -1.05
MCF2-209ENST00000520602 ATRXP46100 2492 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 IGKV1D-17A0A075B6S4 117 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 GFRA3O60609 400 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 TIMP3P35625 211 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 SPCS3P61009 180 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 TMEM241Q24JQ0 296 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 MRGPRGQ86SM5 289 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 MBNL3Q9NUK0 354 aaKnown RBP8.47□□□□□ -1.05
MCF2-209ENST00000520602 DKK4Q9UBT3 224 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 CNIH1O95406 144 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 IGHV1-46P01743 117 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 OR5G3P0C626 314 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 RAB5AP20339 215 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 TCTEX1D1Q8N7M0 179 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 UHRF2Q96PU4 802 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 VSIRQ9H7M9 311 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 IL19Q9UHD0 177 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 FAM215AQ9Y5M1 114 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 LINC00473A8K010 186 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 PPIHO43447 177 aaKnown RBP8.47□□□□□ -1.05
MCF2-209ENST00000520602 FAM90A1Q86YD7 464 aa8.47□□□□□ -1.05
MCF2-209ENST00000520602 RAB24Q969Q5 203 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms