RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 CATR1Q13166 79 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 EIF4EBP1Q13541 118 aaPredicted RBP8.01□□□□□ -1.13
NUP54-203ENST00000504173 EBI3Q14213 229 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 ABCA11PQ4W5N1 156 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 OR2B11Q5JQS5 317 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 DHRS7BQ6IAN0 325 aaPredicted RBP8.01□□□□□ -1.13
NUP54-203ENST00000504173 CCBE1Q6UXH8 406 aaPredicted RBP8.01□□□□□ -1.13
NUP54-203ENST00000504173 ZNF66Q6ZN08 573 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 IDO2Q6ZQW0 420 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 C16orf82Q7Z2V1 217 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 PDPNQ86YL7 162 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 OR13C8Q8NGS7 320 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 ZFAND1Q8TCF1 268 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 MARCH1Q8TCQ1 289 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 TCTEX1D2Q8WW35 142 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 RBMXL1Q96E39 390 aaKnown RBP8.01□□□□□ -1.13
NUP54-203ENST00000504173 RBM14Q96PK6 669 aaKnown RBP8.01□□□□□ -1.13
NUP54-203ENST00000504173 GPHA2Q96T91 129 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 C7orf50Q9BRJ6 194 aaKnown RBP8.01□□□□□ -1.13
NUP54-203ENST00000504173 RSRP1Q9BUV0 290 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 PRELID3BQ9Y3B1 194 aa8.01□□□□□ -1.13
NUP54-203ENST00000504173 FAM181BA6NEQ2 426 aa8□□□□□ -1.13
NUP54-203ENST00000504173 FCGR3BO75015 233 aa8□□□□□ -1.13
NUP54-203ENST00000504173 PGLYRP1O75594 196 aaPredicted RBP8□□□□□ -1.13
NUP54-203ENST00000504173 UPK1BO75841 260 aa8□□□□□ -1.13
NUP54-203ENST00000504173 RLN1P04808 185 aa8□□□□□ -1.13
NUP54-203ENST00000504173 RRASP10301 218 aa8□□□□□ -1.13
NUP54-203ENST00000504173 PI3P19957 117 aa8□□□□□ -1.13
NUP54-203ENST00000504173 KIR2DS2P43631 304 aa8□□□□□ -1.13
NUP54-203ENST00000504173 RPL30P62888 115 aaKnown RBP8□□□□□ -1.13
NUP54-203ENST00000504173 SURF2Q15527 256 aaPredicted RBP8□□□□□ -1.13
NUP54-203ENST00000504173 MMDQ15546 238 aa8□□□□□ -1.13
NUP54-203ENST00000504173 OR51H1Q8NH63 302 aa8□□□□□ -1.13
NUP54-203ENST00000504173 DDB2Q92466 427 aa8□□□□□ -1.13
NUP54-203ENST00000504173 MRGPRFQ96AM1 343 aa8□□□□□ -1.13
NUP54-203ENST00000504173 FLYWCH2Q96CP2 140 aaKnown RBP8□□□□□ -1.13
NUP54-203ENST00000504173 ZNF486Q96H40 463 aaPredicted RBP8□□□□□ -1.13
NUP54-203ENST00000504173 SCGB3A2Q96PL1 93 aa8□□□□□ -1.13
NUP54-203ENST00000504173 C1RLQ9NZP8 487 aa8□□□□□ -1.13
NUP54-203ENST00000504173 C14orf166Q9Y224 244 aaKnown RBP8□□□□□ -1.13
NUP54-203ENST00000504173 MOB4Q9Y3A3 225 aa8□□□□□ -1.13
NUP54-203ENST00000504173 NCBP2LA6PVI3 153 aaKnown RBP7.99□□□□□ -1.13
NUP54-203ENST00000504173 M0QZK8 103 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 PEX14O75381 377 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 CRYZL1O95825 349 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 IGKV1-16P04430 117 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 CTSDP07339 412 aaPredicted RBP7.99□□□□□ -1.13
NUP54-203ENST00000504173 PIGPP57054 158 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 RPL15P61313 204 aaKnown RBP7.99□□□□□ -1.13
NUP54-203ENST00000504173 RND3P61587 244 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 RPS16P62249 146 aaKnown RBP7.99□□□□□ -1.13
NUP54-203ENST00000504173 Q8N6K4 173 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 CCDC71LQ8N9Z2 235 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 POC5Q8NA72 575 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 OR8H1Q8NGG4 311 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 OR4C13Q8NGP0 309 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 OR4S2Q8NH73 311 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 TSC22D3Q99576 134 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 NPFFR1Q9GZQ6 430 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 SLC2A9Q9NRM0 540 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 LIN7CQ9NUP9 197 aaKnown RBP7.99□□□□□ -1.13
NUP54-203ENST00000504173 COPZ2Q9P299 210 aa7.99□□□□□ -1.13
NUP54-203ENST00000504173 SHOXO15266 292 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 NBR2O15453 112 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 PLA2G10O15496 165 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 FGF16O43320 207 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 LYRM1O43325 122 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 CNTFRP26992 372 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 CCR6P51684 374 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 FOXL1Q12952 345 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 RBMS2Q15434 407 aaKnown RBP7.98□□□□□ -1.13
NUP54-203ENST00000504173 TMEM177Q53S58 311 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 TBC1D26Q86UD7 250 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 SPAG16Q8N0X2 631 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 CD300LFQ8TDQ1 290 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 RITA1Q96K30 269 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 HARBI1Q96MB7 349 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 TSNAXQ99598 290 aaKnown RBP7.98□□□□□ -1.13
NUP54-203ENST00000504173 RNF5Q99942 180 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 SLC25A21Q9BQT8 299 aaPredicted RBP7.98□□□□□ -1.13
NUP54-203ENST00000504173 KRTAP3-3Q9BYR6 98 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 KRTAP3-2Q9BYR7 98 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 C5orf66Q9H5L9 145 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 KIAA1456Q9P272 454 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 GPR132Q9UNW8 380 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 VSIG4Q9Y279 399 aa7.98□□□□□ -1.13
NUP54-203ENST00000504173 TEX13DA0A0J9YY54 714 aaPredicted RBP7.97□□□□□ -1.13
NUP54-203ENST00000504173 RRHO14718 337 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 MPPED1O15442 326 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 RBFOX2O43251 390 aaKnown RBP eCLIP7.97□□□□□ -1.13
NUP54-203ENST00000504173 SPDEFO95238 335 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 F2RP25116 425 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 BTCP35070 178 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 F2RL1P55085 397 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 PLGLAQ15195 96 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 C9orf152Q5JTZ5 239 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 MZT2BQ6NZ67 158 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 TMED4Q7Z7H5 227 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 C5orf56Q8N8D9 126 aa7.97□□□□□ -1.13
NUP54-203ENST00000504173 Q8N9W7 124 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms