RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 SPAG16Q8N0X2 631 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 CENPSQ8N2Z9 138 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 OR2T10Q8NGZ9 312 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 OR5R1Q8NH85 324 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 DDB2Q92466 427 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 EAF1Q96JC9 268 aaPredicted RBP13.77□□□□□ -0.21
LIME1-208ENST00000493265 RITA1Q96K30 269 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 C20orf85Q9H1P6 137 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 PALMDQ9NP74 551 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 ESM1Q9NQ30 184 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 NUDT15Q9NV35 164 aa13.77□□□□□ -0.21
LIME1-208ENST00000493265 FAM90A9PA6NNJ1 464 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 RAMP3O60896 148 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 MOSP00540 346 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 IGKV1-16P04430 117 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 F2RP25116 425 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 RAB25P57735 213 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 RND3P61587 244 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 RPS16P62249 146 aaKnown RBP13.76□□□□□ -0.21
LIME1-208ENST00000493265 SLC9A3R2Q15599 337 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 TUSC1Q2TAM9 212 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 SP6Q3SY56 376 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 CCBE1Q6UXH8 406 aaPredicted RBP13.76□□□□□ -0.21
LIME1-208ENST00000493265 PDPNQ86YL7 162 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 TMEM230Q96A57 120 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 CHIAQ9BZP6 476 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 LIN7CQ9NUP9 197 aaKnown RBP13.76□□□□□ -0.21
LIME1-208ENST00000493265 TCF19Q9Y242 345 aa13.76□□□□□ -0.21
LIME1-208ENST00000493265 C3orf85A0A1B0GTC6 90 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 A6NDX4 124 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 NCBP2LA6PVI3 153 aaKnown RBP13.75□□□□□ -0.21
LIME1-208ENST00000493265 TCF21O43680 179 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 RRASP10301 218 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 SPNP16150 400 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 ANXA7P20073 488 aaKnown RBP13.75□□□□□ -0.21
LIME1-208ENST00000493265 CNTFRP26992 372 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 BRWD1-AS2P59051 145 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 TAGLNQ01995 201 aaKnown RBP13.75□□□□□ -0.21
LIME1-208ENST00000493265 THNSL2Q86YJ6 484 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 SGPP2Q8IWX5 399 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 OR4S2Q8NH73 311 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 FLYWCH2Q96CP2 140 aaKnown RBP13.75□□□□□ -0.21
LIME1-208ENST00000493265 TP53RKQ96S44 253 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 NAA60Q9H7X0 242 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 PITPNC1Q9UKF7 332 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 VPREB3Q9UKI3 123 aa13.75□□□□□ -0.21
LIME1-208ENST00000493265 CRYM-AS1A6NIL9 109 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 SHOXO15266 292 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 H2AFB2P0C5Z0 115 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 RPA2P15927 270 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 VAMP1P23763 118 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 KIR2DS2P43631 304 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 LPAR6P43657 344 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 HILS1P60008 231 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 MMDQ15546 238 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 HARBI1Q96MB7 349 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 SLC25A33Q9BSK2 321 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 PRR13Q9NZ81 148 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 NUBP2Q9Y5Y2 271 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 POMT1Q9Y6A1 747 aa13.74□□□□□ -0.21
LIME1-208ENST00000493265 CHST1O43916 411 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 SERPINE2P07093 398 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 OR5AC1P0C628 307 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 F2RL1P55085 397 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 TAS2R31P59538 309 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 EBI3Q14213 229 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 TRIM16LQ309B1 348 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 SLC25A42Q86VD7 318 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 OR4C13Q8NGP0 309 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 JMJD8Q96S16 334 aa13.73□□□□□ -0.21
LIME1-208ENST00000493265 A0A0A6YYJ9 748 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 H0Y980 276 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 GPR137BO60478 399 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 S1PR2O95136 353 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 VSIG10L2P0DP72 767 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 PPP1R1AQ13522 171 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 RGS21Q2M5E4 152 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 C4orf46Q504U0 113 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 DHRS7BQ6IAN0 325 aaPredicted RBP13.72□□□□□ -0.21
LIME1-208ENST00000493265 PLET1Q6UQ28 207 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 SSX9Q7RTT3 188 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 VKORC1L1Q8N0U8 176 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 TMEM86BQ8N661 226 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 Q8N6K4 173 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 CASTOR1Q8WTX7 329 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 RBM14Q96PK6 669 aaKnown RBP13.72□□□□□ -0.21
LIME1-208ENST00000493265 KCNIP3Q9Y2W7 256 aa13.72□□□□□ -0.21
LIME1-208ENST00000493265 SH2D7A6NKC9 451 aaPredicted RBP13.71□□□□□ -0.21
LIME1-208ENST00000493265 NBR2O15453 112 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 OR2F2O95006 317 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 PTTG1O95997 202 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 UBA52P62987 128 aaKnown RBP13.71□□□□□ -0.21
LIME1-208ENST00000493265 SUPT4H1P63272 117 aaKnown RBP13.71□□□□□ -0.21
LIME1-208ENST00000493265 PLGLAQ15195 96 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 ZNF585BQ52M93 769 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 TMEM177Q53S58 311 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 TMEM128Q5BJH2 165 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 C11orf88Q6PI97 169 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 DUSP18Q8NEJ0 188 aa13.71□□□□□ -0.21
LIME1-208ENST00000493265 CD300LFQ8TDQ1 290 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms