RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 PGLYRP1O75594 196 aaPredicted RBP8.25□□□□□ -1.09
SKA1-204ENST00000488454 UPK1BO75841 260 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 IGLV2-14P01704 120 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 RNASE1P07998 156 aaKnown RBP8.25□□□□□ -1.09
SKA1-204ENST00000488454 KIR2DS2P43631 304 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 HABP2Q14520 560 aaPredicted RBP8.25□□□□□ -1.09
SKA1-204ENST00000488454 SURF2Q15527 256 aaPredicted RBP8.25□□□□□ -1.09
SKA1-204ENST00000488454 PHLDA2Q53GA4 152 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 MZT2BQ6NZ67 158 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 KCTD9Q7L273 389 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 C16orf82Q7Z2V1 217 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 TMEM219Q86XT9 240 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 PDPNQ86YL7 162 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 CCDC71LQ8N9Z2 235 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 MARCH1Q8TCQ1 289 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 ZNF486Q96H40 463 aaPredicted RBP8.25□□□□□ -1.09
SKA1-204ENST00000488454 EAF1Q96JC9 268 aaPredicted RBP8.25□□□□□ -1.09
SKA1-204ENST00000488454 SLC25A21Q9BQT8 299 aaPredicted RBP8.25□□□□□ -1.09
SKA1-204ENST00000488454 CHIAQ9BZP6 476 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 FXYD6Q9H0Q3 95 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 COPZ2Q9P299 210 aa8.25□□□□□ -1.09
SKA1-204ENST00000488454 NSD1Q96L73 2696 aaPredicted RBP8.24□□□□□ -1.09
SKA1-204ENST00000488454 M0QZK8 103 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 GPR137BO60478 399 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 FCGR3BO75015 233 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 OR2F2O95006 317 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 CTSDP07339 412 aaPredicted RBP8.24□□□□□ -1.09
SKA1-204ENST00000488454 PIGPP57054 158 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 LINC00205P59089 165 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 RPS16P62249 146 aaKnown RBP8.24□□□□□ -1.09
SKA1-204ENST00000488454 EBI3Q14213 229 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 DHRS7BQ6IAN0 325 aaPredicted RBP8.24□□□□□ -1.09
SKA1-204ENST00000488454 C11orf88Q6PI97 169 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 OR8H1Q8NGG4 311 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 OR4C13Q8NGP0 309 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 OR13C8Q8NGS7 320 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 OR51H1Q8NH63 302 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 CD300LFQ8TDQ1 290 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 C5orf30Q96GV9 206 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 RBM14Q96PK6 669 aaKnown RBP8.24□□□□□ -1.09
SKA1-204ENST00000488454 TSNAXQ99598 290 aaKnown RBP8.24□□□□□ -1.09
SKA1-204ENST00000488454 RNF5Q99942 180 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 AIFM2Q9BRQ8 373 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 SLC25A33Q9BSK2 321 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 KIAA1456Q9P272 454 aa8.24□□□□□ -1.09
SKA1-204ENST00000488454 TEX13DA0A0J9YY54 714 aaPredicted RBP8.23□□□□□ -1.09
SKA1-204ENST00000488454 LINC00473A8K010 186 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 SHOXO15266 292 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 MPPED1O15442 326 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 LYRM1O43325 122 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 RLN1P04808 185 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 PI3P19957 117 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 LGALS7P47929 136 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 DEFA1P59665 94 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 DEFA3P59666 94 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 RPL15P61313 204 aaKnown RBP8.23□□□□□ -1.09
SKA1-204ENST00000488454 RPL30P62888 115 aaKnown RBP8.23□□□□□ -1.09
SKA1-204ENST00000488454 RBMS2Q15434 407 aaKnown RBP8.23□□□□□ -1.09
SKA1-204ENST00000488454 MMDQ15546 238 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 OR2B11Q5JQS5 317 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 CCBE1Q6UXH8 406 aaPredicted RBP8.23□□□□□ -1.09
SKA1-204ENST00000488454 TBC1D26Q86UD7 250 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 SPAG16Q8N0X2 631 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 TCTEX1D1Q8N7M0 179 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 OR4S2Q8NH73 311 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 ZFAND2BQ8WV99 257 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 GPHA2Q96T91 129 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 RASL11BQ9BPW5 248 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 NPFFR1Q9GZQ6 430 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 SLC2A9Q9NRM0 540 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 LIN7CQ9NUP9 197 aaKnown RBP8.23□□□□□ -1.09
SKA1-204ENST00000488454 GPR132Q9UNW8 380 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 KCNIP3Q9Y2W7 256 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 MOB4Q9Y3A3 225 aa8.23□□□□□ -1.09
SKA1-204ENST00000488454 FAM240BA0A1B0GVZ2 78 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 PLA2G10O15496 165 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 PEX14O75381 377 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 CRYZL1O95825 349 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 IGKV1-16P04430 117 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 F2RP25116 425 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 CCR6P51684 374 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 RND3P61587 244 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 EIF4EBP1Q13541 118 aaPredicted RBP8.22□□□□□ -1.09
SKA1-204ENST00000488454 PLGLAQ15195 96 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 TMED4Q7Z7H5 227 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 PRIMA1Q86XR5 153 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 SGPP2Q8IWX5 399 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 OSR1Q8TAX0 266 aaPredicted RBP8.22□□□□□ -1.09
SKA1-204ENST00000488454 DDB2Q92466 427 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 HARBI1Q96MB7 349 aa8.22□□□□□ -1.09
SKA1-204ENST00000488454 RTBDNQ9BSG5 229 aaPredicted RBP8.22□□□□□ -1.09
SKA1-204ENST00000488454 FBN3Q75N90 2809 aa8.21□□□□□ -1.09
SKA1-204ENST00000488454 MXRA5Q9NR99 2828 aa8.21□□□□□ -1.09
SKA1-204ENST00000488454 C2CD3Q4AC94 2353 aa8.21□□□□□ -1.09
SKA1-204ENST00000488454 C3orf85A0A1B0GTC6 90 aa8.21□□□□□ -1.1
SKA1-204ENST00000488454 NBR2O15453 112 aa8.21□□□□□ -1.1
SKA1-204ENST00000488454 RBFOX2O43251 390 aaKnown RBP eCLIP8.21□□□□□ -1.1
SKA1-204ENST00000488454 FGF16O43320 207 aa8.21□□□□□ -1.1
SKA1-204ENST00000488454 B3GALNT1O75752 331 aa8.21□□□□□ -1.1
SKA1-204ENST00000488454 NDUFB6O95139 128 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms