RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 APOBEC3DQ96AK3 386 aaPredicted RBP2.11□□□□□ -2.07
USP48-209ENST00000487880 RAD51AP1Q96B01 352 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 ZHX1-C8orf76Q96EF9 292 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 SLC25A44Q96H78 314 aaPredicted RBP2.11□□□□□ -2.07
USP48-209ENST00000487880 PYURFQ96I23 114 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 TRIB3Q96RU7 358 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 STACQ99469 402 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 TCEAL7Q9BRU2 100 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 UTP23Q9BRU9 249 aaKnown RBP2.11□□□□□ -2.07
USP48-209ENST00000487880 LXNQ9BS40 222 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 UGT2B28Q9BY64 529 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 TM6SF2Q9BZW4 377 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 C20orf27Q9GZN8 174 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 SLC22A4Q9H015 551 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 PLEKHA1Q9HB21 404 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 RHOFQ9HBH0 211 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 XPNPEP1Q9NQW7 623 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 SCN3BQ9NY72 215 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 C3orf18Q9UK00 162 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 GINS2Q9Y248 185 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 AFDNP55196 1824 aaKnown RBP2.11□□□□□ -2.07
USP48-209ENST00000487880 TNRC6CQ9HCJ0 1690 aaKnown RBP2.11□□□□□ -2.07
USP48-209ENST00000487880 SLIT2O94813 1529 aa2.11□□□□□ -2.07
USP48-209ENST00000487880 DIP2BQ9P265 1576 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 MAST2Q6P0Q8 1798 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 TNS3Q68CZ2 1445 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 A0A1B0GXF2 115 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 PRORSD1PA6NEY8 169 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 ARGFXA6NJG6 315 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 C2orf74A8MZ97 194 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 H3BMM0 161 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 RFXANKO14593 260 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 PSCAO43653 123 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 IL6P05231 212 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 S100PP25815 95 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 CNTFRP26992 372 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 DNAJB13P59910 316 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 AP1S1P61966 158 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 SLC35A2P78381 396 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 GTF2BQ00403 316 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 EMX1Q04741 257 aaPredicted RBP2.1□□□□□ -2.07
USP48-209ENST00000487880 STX4Q12846 297 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 Q5BKY6 102 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 N4BP2L1Q5TBK1 243 aaPredicted RBP2.1□□□□□ -2.07
USP48-209ENST00000487880 TEX261Q6UWH6 196 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 FAM19A1Q7Z5A9 133 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 DPPA2Q7Z7J5 298 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 CYP4Z1Q86W10 505 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 ATPAF2Q8N5M1 289 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 C12orf29Q8N999 325 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 DNAAF3Q8N9W5 541 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 TMEM35BQ8NCS4 154 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 OR2M3Q8NG83 312 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 OR13C9Q8NGT0 318 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 DOK4Q8TEW6 326 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 UBE2WQ96B02 151 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 KLF6Q99612 283 aaPredicted RBP2.1□□□□□ -2.07
USP48-209ENST00000487880 C12orf57Q99622 126 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 EBNA1BP2Q99848 306 aaKnown RBP2.1□□□□□ -2.07
USP48-209ENST00000487880 ZNF251Q9BRH9 671 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 DCSTAMPQ9H295 470 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 BIN3Q9NQY0 253 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 AGPAT3Q9NRZ7 376 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 COA4Q9NYJ1 87 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 VAPAQ9P0L0 249 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 OPTCQ9UBM4 332 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 CYB5R1Q9UHQ9 305 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 BAIAP2Q9UQB8 552 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 U3KQ87 197 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 PTPRFP10586 1907 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 COL24A1Q17RW2 1714 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 NUP188Q5SRE5 1749 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 BAHCC1Q9P281 2608 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 RBBP6Q7Z6E9 1792 aaKnown RBP2.1□□□□□ -2.07
USP48-209ENST00000487880 SCN11AQ9UI33 1791 aa2.1□□□□□ -2.07
USP48-209ENST00000487880 TANC1Q9C0D5 1861 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 SCN7AQ01118 1682 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 ALS2Q96Q42 1657 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 LAMB2P55268 1798 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 LOC100130705A0A1B0GUX0 176 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 EFCAB9A8MZ26 197 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 E5RI56 91 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 KCNK1O00180 336 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 SULT1C2O00338 296 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 MRASO14807 208 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 ZNF73O43830 326 aaPredicted RBP2.09□□□□□ -2.07
USP48-209ENST00000487880 ORC5O43913 435 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 SCN2BO60939 215 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 NIPSNAP2O75323 286 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 CRTAPO75718 401 aaPredicted RBP2.09□□□□□ -2.07
USP48-209ENST00000487880 DHFRP00374 187 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 S100A9P06702 114 aaKnown RBP2.09□□□□□ -2.07
USP48-209ENST00000487880 HTR1AP08908 422 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 RBP1P09455 135 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 CD36P16671 472 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 SPI1P17947 270 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 NUP62P37198 522 aaPredicted RBP2.09□□□□□ -2.07
USP48-209ENST00000487880 ATP5J2P56134 94 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 RRAS2P62070 204 aaPredicted RBP2.09□□□□□ -2.07
USP48-209ENST00000487880 TSPAN5P62079 268 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms