RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 RAET1LQ5VY80 246 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 TMEM144Q7Z5S9 345 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.06□□□□□ -1.12
HDAC3-205ENST00000469550 ZNF573Q86YE8 665 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 MKXQ8IYA7 352 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 OR10J5Q8NHC4 309 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 NEIL1Q96FI4 390 aaPredicted RBP8.06□□□□□ -1.12
HDAC3-205ENST00000469550 FOXB1Q99853 325 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 VKORC1Q9BQB6 163 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 ELOVL1Q9BW60 279 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 NAGKQ9UJ70 344 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 POLR3KQ9Y2Y1 108 aaPredicted RBP8.06□□□□□ -1.12
HDAC3-205ENST00000469550 PKDREJQ9NTG1 2253 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 GTF3C1Q12789 2109 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 TEP1Q99973 2627 aaKnown RBP8.06□□□□□ -1.12
HDAC3-205ENST00000469550 MARCH11A6NNE9 402 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 DEGS1O15121 323 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 MLNRO43193 412 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 IGKV1-5P01602 117 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 IAPPP10997 89 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 ELLP55199 621 aaPredicted RBP8.06□□□□□ -1.12
HDAC3-205ENST00000469550 PRSS12P56730 875 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 MLF1P58340 268 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 UBE2NP61088 152 aaKnown RBP8.06□□□□□ -1.12
HDAC3-205ENST00000469550 GNB2P62879 340 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 SLC38A11Q08AI6 406 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 FOXL1Q12952 345 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 TMEM249Q2WGJ8 235 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 CEACAM21Q3KPI0 293 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 SPINK14Q6IE38 97 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 RPS19BP1Q86WX3 136 aaKnown RBP8.06□□□□□ -1.12
HDAC3-205ENST00000469550 C20orf144Q9BQM9 153 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 SH3BGRL2Q9UJC5 107 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 PXMP4Q9Y6I8 212 aa8.06□□□□□ -1.12
HDAC3-205ENST00000469550 PCNX1Q96RV3 2341 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 ZNF716A6NP11 495 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 TRAPPC2LH3BP13 241 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 C19orf84I3L1E1 186 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 TMPRSS2O15393 492 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 DLEU1O43261 78 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 SCGB1D1O95968 90 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 MMP7P09237 267 aaPredicted RBP8.05□□□□□ -1.12
HDAC3-205ENST00000469550 LINC00614P0C842 121 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 B4GALT1P15291 398 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 ZNF25P17030 456 aaPredicted RBP8.05□□□□□ -1.12
HDAC3-205ENST00000469550 CDSNQ15517 529 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 TESK1Q15569 626 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 OR10V1Q8NGI7 309 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 OR4F5Q8NH21 305 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 OR51H1Q8NH63 302 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 WDYHV1Q96HA8 205 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 OR4F4Q96R69 305 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 SRXN1Q9BYN0 137 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 CHODLQ9H9P2 273 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 PROK2Q9HC23 129 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 SH2D2AQ9NP31 389 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 CBLN4Q9NTU7 201 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 CBY1Q9Y3M2 126 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 RTTNQ86VV8 2226 aa8.05□□□□□ -1.12
HDAC3-205ENST00000469550 CBR3O75828 277 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 IGLV2-14P01704 120 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 RPLP1P05386 114 aaKnown RBP8.04□□□□□ -1.12
HDAC3-205ENST00000469550 IL3RAP26951 378 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 G0S2P27469 103 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 NTF4P34130 210 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 CYB561P49447 251 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 ZNF585BQ52M93 769 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 RNFT1Q5M7Z0 435 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 SPANXN5Q5MJ07 72 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 ZNF468Q5VIY5 522 aaPredicted RBP8.04□□□□□ -1.12
HDAC3-205ENST00000469550 ACSM6Q6P461 480 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 AAED1Q7RTV5 226 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 DOLPP1Q86YN1 238 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 OR10G9Q8NGN4 311 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 OR10G7Q8NGN6 311 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 NEK7Q8TDX7 302 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 MS4A10Q96PG2 267 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 TMEM147Q9BVK8 224 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 LIN7CQ9NUP9 197 aaKnown RBP8.04□□□□□ -1.12
HDAC3-205ENST00000469550 MTCH1Q9NZJ7 389 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 KLF13Q9Y2Y9 288 aaPredicted RBP8.04□□□□□ -1.12
HDAC3-205ENST00000469550 GOLT1BQ9Y3E0 138 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 TRAPPC1Q9Y5R8 145 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 UBE2L5PA0A1B0GUS4 154 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 PRRG2O14669 202 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 PATE4P0C8F1 98 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 ESDP10768 282 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 COX5AP20674 150 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 OR3A1P47881 315 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 YPEL3P61236 119 aaPredicted RBP8.04□□□□□ -1.12
HDAC3-205ENST00000469550 RANP62826 216 aaKnown RBP8.04□□□□□ -1.12
HDAC3-205ENST00000469550 PAFAH1B2P68402 229 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 IZUMO4Q1ZYL8 232 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 CEACAM16Q2WEN9 425 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 ZDHHC23Q8IYP9 409 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 OR5A2Q8NGI9 324 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 FGFBP3Q8TAT2 258 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 HS3ST6Q96QI5 342 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 TMEM208Q9BTX3 173 aa8.04□□□□□ -1.12
HDAC3-205ENST00000469550 FGF23Q9GZV9 251 aaPredicted RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms