RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 AQP10Q96PS8 301 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 AIFM2Q9BRQ8 373 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 IFI27L2Q9H2X8 130 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 PRELID3BQ9Y3B1 194 aa9.62□□□□□ -0.87
USP54-209ENST00000464635 A0A1B0GW55 424 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 E5RGE8 158 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 FCN3O75636 299 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 HPRT1P00492 218 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 DUX4L2P0CJ85 424 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 DUX4L3P0CJ86 424 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 DUX4L4P0CJ87 422 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 DUX4L5P0CJ88 424 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 DUX4L6P0CJ89 424 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 DUX4L7P0CJ90 424 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 RRASP10301 218 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 CXCL2P19875 107 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 NUP62P37198 522 aaPredicted RBP9.61□□□□□ -0.87
USP54-209ENST00000464635 THBS3P49746 956 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 ZNF134P52741 427 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 GNMTQ14749 295 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 OPCMLQ14982 345 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 CT45A1Q5HYN5 189 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 WDR25Q64LD2 544 aaPredicted RBP9.61□□□□□ -0.87
USP54-209ENST00000464635 THOC7Q6I9Y2 204 aaKnown RBP9.61□□□□□ -0.87
USP54-209ENST00000464635 DUX4L9Q6RFH8 374 aaPredicted RBP9.61□□□□□ -0.87
USP54-209ENST00000464635 TMUB2Q71RG4 321 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 SLC51BQ86UW2 128 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 CT45A3Q8NHU0 189 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 S1PR3Q99500 378 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 PARP12Q9H0J9 701 aaKnown RBP9.61□□□□□ -0.87
USP54-209ENST00000464635 HEXA-AS1Q9H8Q6 139 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 C19orf12Q9NSK7 152 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 DUX4Q9UBX2 424 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 PSG11Q9UQ72 335 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 NSG2Q9Y328 171 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 MMP24Q9Y5R2 645 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 POMT1Q9Y6A1 747 aa9.61□□□□□ -0.87
USP54-209ENST00000464635 TENM1Q9UKZ4 2725 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 ANK2Q01484 3957 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 FXYD6-FXYD2A0A087WZ82 144 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 MPTX1A8MV57 137 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 M0R1W7 72 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 ARPC5O15511 151 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 PROP1O75360 226 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 LIPFP07098 398 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 FGF2P09038 288 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 P0C879 139 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 P2RY1P47900 373 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 LCN2P80188 198 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 RAB32Q13637 225 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 ZNF273Q14593 569 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 POU2AF1Q16633 256 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 AARDQ4LEZ3 155 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 DHRS7BQ6IAN0 325 aaPredicted RBP9.6□□□□□ -0.87
USP54-209ENST00000464635 FGFRL1Q8N441 504 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 C11orf42Q8N5U0 333 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 OR51H1Q8NH63 302 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 OR9G1Q8NH87 305 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 DDB2Q92466 427 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 RRNAD1Q96FB5 475 aaKnown RBP9.6□□□□□ -0.87
USP54-209ENST00000464635 ZNF251Q9BRH9 671 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 UNKLQ9H9P5 680 aaKnown RBP9.6□□□□□ -0.87
USP54-209ENST00000464635 POLR3KQ9Y2Y1 108 aaPredicted RBP9.6□□□□□ -0.87
USP54-209ENST00000464635 SESN1Q9Y6P5 492 aa9.6□□□□□ -0.87
USP54-209ENST00000464635 RNF222A6NCQ9 220 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 A8MXK9 166 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 H0YIZ8 118 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 TOR1AO14656 332 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 ST8SIA5O15466 376 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 IFNA7P01567 189 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 MBPP02686 304 aaPredicted RBP9.59□□□□□ -0.87
USP54-209ENST00000464635 IGHV1-8P0DP01 117 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 PVALBP20472 110 aaPredicted RBP9.59□□□□□ -0.87
USP54-209ENST00000464635 EPHA1P21709 976 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 NKX2-1P43699 371 aaPredicted RBP9.59□□□□□ -0.87
USP54-209ENST00000464635 TAS2R30P59541 319 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 EIF5AP63241 154 aaKnown RBP9.59□□□□□ -0.87
USP54-209ENST00000464635 TEX261Q6UWH6 196 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 ZNF833PQ6ZTB9 187 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 ODF3L1Q8IXM7 274 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 KIR3DL3Q8N743 410 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 PHYHIPLQ96FC7 376 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 PCGF1Q9BSM1 259 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 C11orf1Q9H5F2 150 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 PLSCR3Q9NRY6 295 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 GSKIPQ9P0R6 139 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 MBD2Q9UBB5 411 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 U3KQ87 197 aa9.59□□□□□ -0.87
USP54-209ENST00000464635 IGHV3-43A0A0B4J1X8 118 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 J3QR06 171 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 K7EPK0 472 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 HAX1O00165 279 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 TNFSF12O43508 249 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 MED6O75586 246 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 SCAF4O95104 1147 aaKnown RBP9.58□□□□□ -0.88
USP54-209ENST00000464635 IGKV1-39P01597 117 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 IGKV1D-39P04432 117 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 IGHV3-43DP0DP04 118 aa9.58□□□□□ -0.88
USP54-209ENST00000464635 ZFP36P26651 326 aaKnown RBP9.58□□□□□ -0.88
USP54-209ENST00000464635 IL3RAP26951 378 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms