RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 LINC00869P0C866 280 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF25P17030 456 aaPredicted RBP6□□□□□ -1.45
SYNE1-216ENST00000461872 CHRNB4P30926 498 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 ERASQ7Z444 233 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 OR2M7Q8NG81 312 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 OSR1Q8TAX0 266 aaPredicted RBP6□□□□□ -1.45
SYNE1-216ENST00000461872 PCGF1Q9BSM1 259 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 RSG1Q9BU20 258 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 MRPL27Q9P0M9 148 aaKnown RBP6□□□□□ -1.45
SYNE1-216ENST00000461872 PXMP4Q9Y6I8 212 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 S1PR2O95136 353 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 RUNX1Q01196 453 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 MMD2Q8IY49 270 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 GBGT1Q8N5D6 347 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 CNEP1R1Q8N9A8 125 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 NABP1Q96AH0 204 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 TINAGQ9UJW2 476 aa6□□□□□ -1.45
SYNE1-216ENST00000461872 LIPFP07098 398 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 LRRC10Q5BKY1 277 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 PCSK4Q6UW60 755 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 PRR7Q8TB68 274 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 SH3BGRL2Q9UJC5 107 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 TRGV8A0A0C4DH27 118 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 AREGP15514 252 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 PTTG1IPP53801 180 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 FGF8P55075 233 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-216ENST00000461872 ZADH2Q8N4Q0 377 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 SNURFLB1AK76 121 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 CSRP2Q16527 193 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 FA2HQ7L5A8 372 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 PLPPR1Q8TBJ4 325 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 PSG11Q9UQ72 335 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 PLCE1Q9P212 2302 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 KLF3P57682 345 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-216ENST00000461872 CCL20P78556 96 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF816Q0VGE8 651 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-216ENST00000461872 OR4F17Q8NGA8 305 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 OR1K1Q8NGR3 316 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 SSC4DQ8WTU2 575 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 OR1A1Q9P1Q5 309 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 GCSHP23434 173 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 KCNS1Q96KK3 526 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 ST20Q9HBF5 79 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 GRPP07492 148 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 MRPS11P82912 194 aaKnown RBP5.99□□□□□ -1.45
SYNE1-216ENST00000461872 FBXO17Q96EF6 278 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 ABHD14AQ9BUJ0 271 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 OR2H2O95918 312 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 LGALS7P47929 136 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 NUBP1P53384 320 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 CENPVQ7Z7K6 275 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-216ENST00000461872 RARRES2Q99969 163 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 CACNA1HO95180 2353 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 THADAQ6YHU6 1953 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 A0A0A6YYD4 124 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 WDR25Q64LD2 544 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF497Q6ZNH5 498 aa5.99□□□□□ -1.45
SYNE1-216ENST00000461872 HDHD3Q9BSH5 251 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-216ENST00000461872 LINC01549A6NIU2 74 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 PROB1E7EW31 1015 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 CDIPTO14735 213 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF207O43670 478 aaKnown RBP5.98□□□□□ -1.45
SYNE1-216ENST00000461872 NUTF2P61970 127 aaKnown RBP5.98□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF324BQ6AW86 544 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-216ENST00000461872 CA5BP1Q8WTZ4 195 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 PRO1933Q9H354 126 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 DCAF16Q9NXF7 216 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 MED12Q93074 2177 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 COL5A1P20908 1838 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-216ENST00000461872 TNFSF13O75888 250 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 C8orf88P0DMB2 117 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 RPL23P62829 140 aaKnown RBP5.98□□□□□ -1.45
SYNE1-216ENST00000461872 HERPUD1Q15011 391 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF124Q15973 351 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 WDR83OSQ9Y284 106 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 P01737 135 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 CFHR1Q03591 330 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 WIPI1Q5MNZ9 446 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-216ENST00000461872 IBA57Q5T440 356 aaKnown RBP5.98□□□□□ -1.45
SYNE1-216ENST00000461872 VWCEQ96DN2 955 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 A0A096LPE4 126 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 TRAV38-1A0A0B4J264 116 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 A0A1W2PPZ6 126 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 SOX8P57073 446 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 OR5I1Q13606 314 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 COLCA1Q6ZS62 124 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 GRAMD2BQ96HH9 432 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 RHOVQ96L33 236 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 UCN2Q96RP3 112 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 TMEM70Q9BUB7 260 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 M0R2Z0 102 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 DLL1O00548 723 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 SCTP09683 121 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 FAM169BQ8N8A8 192 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 PYGO2Q9BRQ0 406 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 MRPL18Q9H0U6 180 aaKnown RBP5.98□□□□□ -1.45
SYNE1-216ENST00000461872 DUSP13Q9UII6 198 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 LMX1BO60663 402 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 FCGR3BO75015 233 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF205O95201 554 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms