RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ZNF705BP0CI00 300 aaPredicted RBP3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 CT45A8P0DMV1 189 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 CT45A9P0DMV2 189 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM236CP0DP71 79 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 GADD45AP24522 165 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 HINT1P49773 126 aaPredicted RBP3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 SELENOPP49908 381 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 DIO3P55073 304 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 LINC00310P59036 64 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 CT45A2Q5DJT8 189 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 MEIG1Q5JSS6 88 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 ENTPD8Q5MY95 495 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2T5Q6IEZ7 315 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 LAIR2Q6ISS4 152 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC18B1Q6NT16 456 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 EPGNQ6UW88 154 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 MOB3BQ86TA1 216 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 PPP1R27Q86WC6 154 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC22A18ASQ8N1D0 253 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 DEFB125Q8N687 156 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 CLDN19Q8N6F1 224 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2T29Q8NH02 315 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 OR4A5Q8NH83 315 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 PPCDCQ96CD2 204 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 MUCL1Q96DR8 90 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 SLAMF6Q96DU3 332 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 NUS1Q96E22 293 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 YPEL2Q96QA6 119 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2A7Q96R45 310 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 ADOQ96SZ5 270 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 KXD1Q9BQD3 176 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 PRADC1Q9BSG0 188 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 MLST8Q9BVC4 326 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 OR51E2Q9H255 320 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 ARRDC1-AS1Q9H2J1 176 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 KCNJ16Q9NPI9 418 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 HEBP1Q9NRV9 189 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM100Q9NV29 134 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 OBSL1O75147 1896 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 ADAMTS9Q9P2N4 1935 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 THADAQ6YHU6 1953 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 MYO16Q9Y6X6 1858 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 ANAPC1Q9H1A4 1944 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 TEX48A0A1B0GUV7 120 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 hADV38S2A0JD32 116 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 CYSRT1A8MQ03 144 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 BTNL10A8MVZ5 291 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 HSPB6O14558 160 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 LSM8O95777 96 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 WNT1P04628 370 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 GDF5P43026 501 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 PTH2RP49190 550 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 LHX2P50458 406 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 PGGT1BP53609 377 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 RPS23P62266 143 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 PRDX4Q13162 271 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 FNDC7Q5VTL7 733 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 HBMQ6B0K9 141 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 APOOLQ6UXV4 268 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 Q6ZN92 141 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM219Q86XT9 240 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 C9orf40Q8IXQ3 194 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 PRELID2Q8N945 189 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 GPR26Q8NDV2 337 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 OR51A2Q8NGJ7 313 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC37A2Q8TED4 501 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 WWC2-AS2Q96NR7 200 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 PEBP4Q96S96 227 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 GFI1Q99684 422 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 GGTLC1Q9BX51 225 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 SAMD10Q9BYL1 202 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 WDR61Q9GZS3 305 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 VSIRQ9H7M9 311 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 CLCF1Q9UBD9 225 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 CCL26Q9Y258 94 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 KLHDC2Q9Y2U9 406 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 KIAA1549LQ6ZVL6 1849 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 ATG2BQ96BY7 2078 aa3.98□□□□□ -1.77
CCDC88A-209ENST00000456975 NUP210Q8TEM1 1887 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 SDK1Q7Z5N4 2213 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF638Q14966 1978 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 A0A0B4J2A0 478 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM212A6NML5 194 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF195O14628 629 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF354AO60765 605 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ATP5LO75964 103 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 IGLC2P0DOY2 106 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 IGLC3P0DOY3 106 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 MED14OSP0DP75 135 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 EGR2P11161 476 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 GUCA1AP43080 201 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 RPS14P62263 151 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ADIGQ0VDE8 80 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ENDOGQ14249 297 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 MELKQ14680 651 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF146Q15072 292 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 GSG1Q2KHT4 349 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 AADACL3Q5VUY0 350 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 HRCT1Q6UXD1 115 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 RNF175Q8N4F7 328 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms