RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 KIR3DL3Q8N743 410 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 TMEM52Q8NDY8 209 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 RGP1Q92546 391 aaPredicted RBP6.18□□□□□ -1.42
UPF2-203ENST00000397053 NPIPB3Q92617 1050 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 ISOC2Q96AB3 205 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 LINC00470Q9BZP3 86 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 PAM16Q9Y3D7 125 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 USF3Q68DE3 2245 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 TRBV20OR9-2A0A075B6H5 130 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 PROB1E7EW31 1015 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 NPIPB8E9PQR5 432 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 NPIPB9F8W1W9 429 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 NPIPB7O75200 414 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 MT-ND6P03923 174 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 NGFRP08138 427 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 PTGDSP41222 190 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 JOSD1Q15040 202 aaPredicted RBP6.17□□□□□ -1.42
UPF2-203ENST00000397053 ACSF3Q4G176 576 aaPredicted RBP6.17□□□□□ -1.42
UPF2-203ENST00000397053 IGSF11Q5DX21 431 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 MIC13Q5XKP0 118 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 TXNDC17Q9BRA2 123 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 NXT2Q9NPJ8 142 aaKnown RBP6.17□□□□□ -1.42
UPF2-203ENST00000397053 SEMA5BQ9P283 1151 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 ZNF107Q9UII5 783 aaPredicted RBP6.17□□□□□ -1.42
UPF2-203ENST00000397053 FBXL7Q9UJT9 491 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 JPT1Q9UK76 154 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 TMEM250H0YL14 139 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 NDUFB4O95168 129 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 ZP4Q12836 540 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 SAPCD1Q5SSQ6 148 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 GTSCR1Q86UQ5 136 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 C3orf56Q8N813 242 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 VN1R17PQ8TDU5 208 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 DMRTA2Q96SC8 542 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 DLL3Q9NYJ7 618 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 ELOA3CA0A087WX78 387 aaPredicted RBP6.17□□□□□ -1.42
UPF2-203ENST00000397053 A0A1W2PQM1 296 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 SCTP09683 121 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 EFNB2P52799 333 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 C3orf36Q3SXR2 165 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 ZNF645Q8N7E2 425 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 NRIP2Q9BQI9 281 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 AKIRIN1Q9H9L7 192 aaPredicted RBP6.17□□□□□ -1.42
UPF2-203ENST00000397053 NUP188Q5SRE5 1749 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 HMSDA8MTL9 139 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 DIRC3C9JPN6 131 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 LY6DQ14210 128 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 NSUN5P1Q3KNT7 163 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 PEAR1Q5VY43 1037 aaPredicted RBP6.17□□□□□ -1.42
UPF2-203ENST00000397053 Q6ZT83 130 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 GOLT1AQ6ZVE7 132 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 SFRP2Q96HF1 295 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 PGLYRP4Q96LB8 373 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 WDFY2Q96P53 400 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 AKIP1Q9NQ31 210 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 IL36RNQ9UBH0 155 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 TNFSF18Q9UNG2 199 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 TRBV7-9A0A0J9YWB2 115 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 SLC25A20O43772 301 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 MMP9P14780 707 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 VDAC2P45880 294 aaPredicted RBP6.17□□□□□ -1.42
UPF2-203ENST00000397053 GLIPR1P48060 266 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 LBHQ53QV2 105 aaPredicted RBP6.17□□□□□ -1.42
UPF2-203ENST00000397053 DTX2Q86UW9 622 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 PPP1R27Q86WC6 154 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 FGFRL1Q8N441 504 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 SIGLEC12Q96PQ1 595 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 GDF15Q99988 308 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 OR51M1Q9H341 326 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 FBXL15Q9H469 300 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 TCF19Q9Y242 345 aa6.17□□□□□ -1.42
UPF2-203ENST00000397053 TRAV24A0A0B4J272 114 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 IGHV3-66A0A0C4DH42 116 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 TCRBV4S1A1TA0A5B7 111 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 H3BQ15 152 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 LEPROTL1O95214 131 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 SEC11BP0C7V7 166 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 GPR183P32249 361 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 RUNX1Q01196 453 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 H1FOOQ8IZA3 346 aaPredicted RBP6.16□□□□□ -1.42
UPF2-203ENST00000397053 C2orf88Q9BSF0 95 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 TMEM74BQ9NUR3 256 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 FOXJ2Q9P0K8 574 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 HEATR5BQ9P2D3 2071 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 A0A1W2PPV9 198 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 C7orf66A4D0T2 115 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 C7orf77A4D0Y5 90 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 C19orf67A6NJJ6 358 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 MARCH11A6NNE9 402 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 H0Y980 276 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 CD160O95971 181 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 CNTFRP26992 372 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 LTBRP36941 435 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 ASIPP42127 132 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 NUDT11Q96G61 164 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 ACACBO00763 2458 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 MYO7BQ6PIF6 2116 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 TRGV4A0A0C4DH28 118 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 PRR32B1ATL7 298 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 OR11H12B2RN74 326 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms