RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PRR27Q6MZM9 219 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 GAPTQ8N292 157 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 OR10R2Q8NGX6 335 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 CNIH3Q8TBE1 160 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 RTN4IP1Q8WWV3 396 aaPredicted RBP7.01□□□□□ -1.29
HMGB1-203ENST00000341423 UBE2E2Q96LR5 201 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 CNOT2Q9NZN8 540 aaKnown RBP7.01□□□□□ -1.29
HMGB1-203ENST00000341423 EFNA2O43921 213 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 HLA-AP01891 365 aaKnown RBP7.01□□□□□ -1.29
HMGB1-203ENST00000341423 ASAH2BP0C7U1 165 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 CRISP2P16562 243 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 SELENOTP62341 195 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 PRB3Q04118 309 aaPredicted RBP7.01□□□□□ -1.29
HMGB1-203ENST00000341423 PSMG4Q5JS54 123 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 IGFL2Q6UWQ7 119 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 ZNF236Q9UL36 1845 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 SIGLEC7Q9Y286 467 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 PHLDA3Q9Y5J5 127 aa7.01□□□□□ -1.29
HMGB1-203ENST00000341423 A0A1W2PQL4 384 aaPredicted RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 K7EPK0 472 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 NME4O00746 187 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 AGPAT2O15120 278 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 SRMP19623 302 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 FAM71E2Q8N5Q1 922 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 GALNT14Q96FL9 552 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 FAAP24Q9BTP7 215 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 SRD5A3Q9H8P0 318 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 RBFOX1Q9NWB1 397 aaKnown RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 SOX21Q9Y651 276 aaPredicted RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 hCG_2014768A0A024R1R8 64 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 KBTBD11-OT1A0A1B0GTJ5 212 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 F8W735 103 aaPredicted RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 LDLRAD4O15165 306 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 DLX1P56177 255 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 H3F3CQ6NXT2 135 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 SLC25A47Q6Q0C1 308 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 TMEM116Q8NCL8 245 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 OR13F1Q8NGS4 319 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 MAFIPQ8WZ33 124 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 MBD6Q96DN6 1003 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 BBC3Q96PG8 261 aaPredicted RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 CHST5Q9GZS9 411 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 TNFRSF18Q9Y5U5 241 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 C22orf46C9J442 243 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 DEDDO75618 318 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 HSPB1P04792 205 aaKnown RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 SPART-AS1P0CW21 52 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 CEBPDP49716 269 aaPredicted RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 ELLP55199 621 aaPredicted RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 TPTE2P1Q5T6R2 138 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 COMMD7Q86VX2 200 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 SMIM3Q9BZL3 60 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 ACTR3CQ9C0K3 210 aaPredicted RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 MYOFQ9NZM1 2061 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 SCN1AP35498 2009 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 IGKV1-8A0A0C4DH67 115 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 IGHV3-23P01764 117 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 G0S2P27469 103 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 PRCDQ00LT1 54 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 SLAQ13239 276 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 OSR1Q8TAX0 266 aaPredicted RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 RAB2BQ8WUD1 216 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 A0A0U1RQV5 110 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 SMIM10L1P0DMW3 83 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 GLIPR1P48060 266 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 B2MP61769 119 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 ZAR1Q86SH2 424 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 FRZBQ92765 325 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 DGCR14Q96DF8 476 aaKnown RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 SMIM10Q96HG1 83 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 RAB40CQ96S21 281 aa7□□□□□ -1.29
HMGB1-203ENST00000341423 ANKRD11Q6UB99 2663 aaPredicted RBP7□□□□□ -1.29
HMGB1-203ENST00000341423 SRRM5B3KS81 715 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 SRIP30626 198 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 PSMB3P49720 205 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 MAB21L1Q13394 359 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 ZNF56Q15929 161 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 FAM53AQ6NSI3 398 aaPredicted RBP6.99□□□□□ -1.29
HMGB1-203ENST00000341423 LEAP2Q969E1 77 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 LIME1Q9H400 295 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 HEATR1Q9H583 2144 aaKnown RBP6.99□□□□□ -1.29
HMGB1-203ENST00000341423 REG1AP05451 166 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 CD1AP06126 327 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 MCCD1P59942 119 aaPredicted RBP6.99□□□□□ -1.29
HMGB1-203ENST00000341423 PRSS53Q2L4Q9 553 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 FBXL19-AS1Q494R0 122 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 MBNL2Q5VZF2 373 aaKnown RBP6.99□□□□□ -1.29
HMGB1-203ENST00000341423 ZNF66Q6ZN08 573 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 IDO2Q6ZQW0 420 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 PRELID1Q9Y255 219 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 NRXN2Q9P2S2 1712 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 PTTG1O95997 202 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 OR5AC1P0C628 307 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 HOXD3P31249 432 aaPredicted RBP6.99□□□□□ -1.29
HMGB1-203ENST00000341423 DMRTA1Q5VZB9 504 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 C10orf113Q5VZT2 155 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 SPSB3Q6PJ21 355 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 DMRTB1Q96MA1 342 aa6.99□□□□□ -1.29
HMGB1-203ENST00000341423 LYRM2Q9NU23 88 aaPredicted RBP6.99□□□□□ -1.29
HMGB1-203ENST00000341423 CHST2Q9Y4C5 530 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms