RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 LRRC10Q5BKY1 277 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 MRPL54Q6P161 138 aaKnown RBP12.51□□□□□ -0.41
TCOF1-201ENST00000323668 ZNF581Q9P0T4 197 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 ALPK3Q96L96 1907 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 IGHV3OR15-7A0A075B7D8 119 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 A0A1W2PPE3 182 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 SLC25A5P05141 298 aaKnown RBP12.5□□□□□ -0.41
TCOF1-201ENST00000323668 CAMPP49913 170 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 PAFAH1B2P68402 229 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 REC114Q7Z4M0 266 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 C12orf77C9JDV5 145 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 EGR1P18146 543 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 S100A7P31151 101 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 RNASEKQ6P5S7 137 aaKnown RBP12.5□□□□□ -0.41
TCOF1-201ENST00000323668 RNF7Q9UBF6 113 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 HES1Q14469 280 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 LBHQ53QV2 105 aaPredicted RBP12.5□□□□□ -0.41
TCOF1-201ENST00000323668 TMEM42Q69YG0 159 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 VSTM2AQ8TAG5 236 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 VN1R17PQ8TDU5 208 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 ARL3P36405 182 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 SLC35E4Q6ICL7 350 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 C1QL4Q86Z23 238 aa12.5□□□□□ -0.41
TCOF1-201ENST00000323668 NAGKQ9UJ70 344 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 ZDHHC8Q9ULC8 765 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 KIAA2026Q5HYC2 2103 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 LRP11Q86VZ4 500 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 NPCDR1Q9BY65 106 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 RFNGQ9Y644 331 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 DOCK7Q96N67 2140 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 TRAV34A0A0B4J273 112 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 NMSQ5H8A3 153 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 SPNS3Q6ZMD2 512 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 LRRK1Q38SD2 2015 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 TRAV24A0A0B4J272 114 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 TMPRSS2O15393 492 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H1BP16401 226 aaKnown RBP12.49□□□□□ -0.41
TCOF1-201ENST00000323668 SSTR5P35346 364 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 C10orf91Q5T1B1 145 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 ETFRF1Q6IPR1 90 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 C1orf174Q8IYL3 243 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 TMEM171Q8WVE6 324 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 ROS1P08922 2347 aa12.49□□□□□ -0.41
TCOF1-201ENST00000323668 NAPSAO96009 420 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 CRYABP02511 175 aaKnown RBP12.48□□□□□ -0.41
TCOF1-201ENST00000323668 ARL14EPLP0DKL9 152 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 USF1P22415 310 aaPredicted RBP12.48□□□□□ -0.41
TCOF1-201ENST00000323668 TRIP6Q15654 476 aaKnown RBP12.48□□□□□ -0.41
TCOF1-201ENST00000323668 SRSF7Q16629 238 aaKnown RBP eCLIP12.48□□□□□ -0.41
TCOF1-201ENST00000323668 SSX7Q7RTT5 188 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 TGIF2LYQ8IUE0 185 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 HSPB9Q9BQS6 159 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 DEPPQ9NTK1 212 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 OR51B2Q9Y5P1 312 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 SHANK1Q9Y566 2161 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 ZNF25P17030 456 aaPredicted RBP12.48□□□□□ -0.41
TCOF1-201ENST00000323668 CSN1S1P47710 185 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 RTP5Q14D33 572 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 BLNKQ8WV28 456 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 ZDHHC16Q969W1 377 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 MISP3Q96FF7 219 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 IL17BQ9UHF5 180 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 ORM2P19652 201 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 FOXL2NBQ6ZUU3 175 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 GGNQ86UU5 652 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 ABHD12Q8N2K0 398 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 MBD3L1Q8WWY6 194 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 STARD4Q96DR4 205 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 QTRT1Q9BXR0 403 aaKnown RBP12.48□□□□□ -0.41
TCOF1-201ENST00000323668 A0A1W2PN81 502 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 WNT9BO14905 357 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 CXCL1P09341 107 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 BRS3P32247 399 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 LCN2P80188 198 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 VAMP3Q15836 100 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 ZNF324BQ6AW86 544 aaPredicted RBP12.48□□□□□ -0.41
TCOF1-201ENST00000323668 TIPARPQ7Z3E1 657 aaKnown RBP12.48□□□□□ -0.41
TCOF1-201ENST00000323668 PLPPR1Q8TBJ4 325 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 TMEM140Q9NV12 185 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 CBY1Q9Y3M2 126 aa12.48□□□□□ -0.41
TCOF1-201ENST00000323668 C17orf98A8MV24 154 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 CHRNB4P30926 498 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 TMEM108Q6UXF1 575 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 OR4X1Q8NH49 305 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 CCL17Q92583 94 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 HARBI1Q96MB7 349 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 TCF19Q9Y242 345 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 TRAV1-1A0A0B4J248 108 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 K7ESF4 209 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 Q6ZN92 141 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 MT-ND6P03923 174 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 HSPE1P61604 102 aaKnown RBP12.47□□□□□ -0.41
TCOF1-201ENST00000323668 RPL23P62829 140 aaKnown RBP12.47□□□□□ -0.41
TCOF1-201ENST00000323668 LINC00469Q8N7U9 141 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 KIAA1671Q9BY89 1806 aa12.47□□□□□ -0.41
TCOF1-201ENST00000323668 CEACAM1P13688 526 aa12.46□□□□□ -0.41
TCOF1-201ENST00000323668 LHX2P50458 406 aa12.46□□□□□ -0.41
TCOF1-201ENST00000323668 ASCL4Q6XD76 172 aa12.46□□□□□ -0.41
TCOF1-201ENST00000323668 MOB3BQ86TA1 216 aa12.46□□□□□ -0.41
TCOF1-201ENST00000323668 OR1L8Q8NGR8 309 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms