RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 GABRG2P18507 467 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 ISL1P61371 349 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 RHOGP84095 191 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 C16orf52Q8NHV5 167 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 PRR15LQ9BU68 103 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 ST6GALNAC4Q9H4F1 302 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 WNT6Q9Y6F9 365 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 TRAV1-2A0A0B4J238 106 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 TRAV24A0A0B4J272 114 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 ZNF729A6NN14 1252 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 UBE2CO00762 179 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 TNFRSF1AP19438 455 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 ZP1P60852 638 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 SLC25A53Q5H9E4 307 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 ABHD17CQ6PCB6 329 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 TMEM144Q7Z5S9 345 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 DEFB105AQ8NG35 78 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 KCNK17Q96T54 332 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 PIK3C2AO00443 1686 aa6.62□□□□□ -1.35
LIMCH1-201ENST00000313860 H3BMG7 143 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 ZFAND5O76080 213 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 CD69Q07108 199 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 TMEFF1Q8IYR6 380 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 GAPTQ8N292 157 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 KLF13Q9Y2Y9 288 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 TECPR2O15040 1411 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 RIC1Q4ADV7 1423 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 PTPRUQ92729 1446 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 IGHV4OR15-8A0A075B7B6 117 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 A0A087WW49 117 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 A0A0G2JK05 382 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 ADARB2-AS1A8MUL3 147 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 PITX3O75364 302 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 MP68P56378 58 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 JAM2P57087 298 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 LY6G6FQ5SQ64 297 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 FBXL14Q8N1E6 418 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 NKD2Q969F2 451 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 SP8Q8IXZ3 490 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 GOLGA4Q13439 2230 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 IGHV3-66A0A0C4DH42 116 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 GAPDHP04406 335 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 CGB7P0DN87 165 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 MORN5Q5VZ52 161 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 TMEM99Q8N816 258 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 SPSB2Q99619 263 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 PRR14Q9BWN1 585 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 PROCRQ9UNN8 238 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 TRGV8A0A0C4DH27 118 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 FRG2CA6NGY1 282 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 FAM90A20PA6NIJ5 464 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 WNT9BO14905 357 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 LMO2P25791 158 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 FOXL2P58012 376 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 CXorf66Q5JRM2 361 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 Q6ZVL8 140 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 CIARTQ8N365 385 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 SH3BGRL3Q9H299 93 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 MTFP1Q9UDX5 166 aa6.61□□□□□ -1.35
LIMCH1-201ENST00000313860 TNS3Q68CZ2 1445 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 IQCF6A8MYZ5 107 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 LEPROTO15243 131 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 DLEU1O43261 78 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 MYF5P13349 255 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 FUSP35637 526 aaKnown RBP eCLIP6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 RPS20P60866 119 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 C2CD4AQ8NCU7 369 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 ITLN2Q8WWU7 325 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 TIMM10BQ9Y5J6 103 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 NRG2O14511 850 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 HYPMO75409 117 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 SNAI1O95863 264 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 CELA3AP09093 270 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 EGR3Q06889 387 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 OVOL2Q9BRP0 275 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 RBM38Q9H0Z9 239 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 ICOSLGO75144 302 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 AGAP20933 346 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 CST5P28325 142 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 SRD5A2P31213 254 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 RPS21P63220 83 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 SMIM2Q9BVW6 85 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 TAAR3PQ9P1P4 343 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 MYO10Q9HD67 2058 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 OGG1O15527 345 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 IGHV4-59P01825 116 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 TGIF1Q15583 401 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 LINC01551Q86U37 167 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 SIGLEC12Q96PQ1 595 aa6.6□□□□□ -1.35
LIMCH1-201ENST00000313860 IGKCP01834 107 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 RNASE4P34096 147 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 C3orf22Q8N5N4 141 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 APOBEC3DQ96AK3 386 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 COQ2Q96H96 371 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 HCSTQ9UBK5 93 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 TIMM23O14925 209 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 COX5BP10606 129 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 RPL27AP46776 148 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 DUSP28Q4G0W2 176 aa6.59□□□□□ -1.35
LIMCH1-201ENST00000313860 TIFABQ6ZNK6 161 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms