RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 HTD2P86397 168 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 BAXQ07812 192 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 CDSNQ15517 529 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 ZBTB34Q8NCN2 500 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 OR4A16Q8NH70 328 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 OR4C12Q96R67 309 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 NGBQ9NPG2 151 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 ZNF835Q9Y2P0 537 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 IFNA10P01566 189 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 DAOP14920 347 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 CFHR2P36980 270 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 SLC38A11Q08AI6 406 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 ZNF273Q14593 569 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 STUMQ69YW2 141 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 HAPLN4Q86UW8 402 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 NUP37Q8NFH4 326 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 CA5BP1Q8WTZ4 195 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 VKORC1Q9BQB6 163 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 ARV1Q9H2C2 271 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 CISD1Q9NZ45 108 aaKnown RBP9.49□□□□□ -0.89
CUX1-202ENST00000292538 JPT1Q9UK76 154 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 PRELID3BQ9Y3B1 194 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 SAA2-SAA4A0A096LPE2 208 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 SNRNP70P08621 437 aaKnown RBP9.49□□□□□ -0.89
CUX1-202ENST00000292538 SAA2P0DJI9 122 aaPredicted RBP9.49□□□□□ -0.89
CUX1-202ENST00000292538 DEFA4P12838 97 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 MYOD1P15172 320 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 ERVK-16P61578 105 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 MRPS11P82912 194 aaKnown RBP9.49□□□□□ -0.89
CUX1-202ENST00000292538 TRAT1Q6PIZ9 186 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 GFOD1Q9NXC2 390 aa9.49□□□□□ -0.89
CUX1-202ENST00000292538 MAP1AP78559 2803 aaPredicted RBP9.48□□□□□ -0.89
CUX1-202ENST00000292538 PPIAL4EA0A075B759 164 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 ZFP92A6NM28 416 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 PPIAL4DF5H284 164 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 DFFBO76075 338 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 PPIAL4FP0DN26 164 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 GNPNAT1Q96EK6 184 aaPredicted RBP9.48□□□□□ -0.89
CUX1-202ENST00000292538 IFI27L2Q9H2X8 130 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 HEYLQ9NQ87 328 aaPredicted RBP9.48□□□□□ -0.89
CUX1-202ENST00000292538 GNG13Q9P2W3 67 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 SSUH2Q9Y2M2 353 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 PPIAL4AQ9Y536 164 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 PUS1Q9Y606 427 aaKnown RBP eCLIP9.48□□□□□ -0.89
CUX1-202ENST00000292538 DYSFO75923 2080 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 A0A1B0GWJ7 208 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 NKX6-3A6NJ46 265 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 CD3EP07766 207 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 GATA4P43694 442 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 ZNF66Q6ZN08 573 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 RXFP4Q8TDU9 374 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 RNASE6Q93091 150 aaKnown RBP9.48□□□□□ -0.89
CUX1-202ENST00000292538 RPS10P5Q9NQ39 176 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 NDRG3Q9UGV2 375 aa9.48□□□□□ -0.89
CUX1-202ENST00000292538 STRAPQ9Y3F4 350 aaKnown RBP9.48□□□□□ -0.89
CUX1-202ENST00000292538 CSMD1Q96PZ7 3565 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 TRAV38-1A0A0B4J264 116 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 PIGBOS1A0A0B4J2F0 54 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 SHISA9B4DS77 424 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 H7C2Y5 167 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 DNASE2O00115 360 aaPredicted RBP9.47□□□□□ -0.89
CUX1-202ENST00000292538 YPEL1O60688 119 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 TAS2R30P59541 319 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 PEA15Q15121 130 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 YPEL2Q96QA6 119 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 AIFM2Q9BRQ8 373 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 TMEM106BQ9NUM4 274 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 PRELID1Q9Y255 219 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 SLC25A6P12236 298 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 MMP9P14780 707 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 RAB5CP51148 216 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 C3orf36Q3SXR2 165 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 C16orf54Q6UWD8 224 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 ZNF788Q6ZQV5 615 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 TCF23Q7RTU1 214 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 ZNF525Q8N782 197 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 OR10P1Q8NGE3 313 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 SEC11CQ9BY50 192 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 RPRMQ9NS64 109 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 MALRD1Q5VYJ5 2156 aa9.47□□□□□ -0.89
CUX1-202ENST00000292538 SNAPINO95295 136 aa9.46□□□□□ -0.89
CUX1-202ENST00000292538 KLRB1Q12918 225 aa9.46□□□□□ -0.89
CUX1-202ENST00000292538 ABHD12Q8N2K0 398 aa9.46□□□□□ -0.89
CUX1-202ENST00000292538 SDSLQ96GA7 329 aa9.46□□□□□ -0.89
CUX1-202ENST00000292538 PBDC1Q9BVG4 233 aa9.46□□□□□ -0.89
CUX1-202ENST00000292538 hADV38S2A0JD32 116 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 NUDT19A8MXV4 375 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 UMAD1C9J7I0 102 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 CD5P06127 495 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 HOXA1P49639 335 aaPredicted RBP9.46□□□□□ -0.9
CUX1-202ENST00000292538 EIF4EBP1Q13541 118 aaPredicted RBP9.46□□□□□ -0.9
CUX1-202ENST00000292538 AVPI1Q5T686 147 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 C1orf87Q8N0U7 546 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 Q8TCH9 128 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 RHOVQ96L33 236 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 TMEM140Q9NV12 185 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 IDI2-AS1Q9NZ38 188 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 JKAMPQ9P055 326 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 HSPB7Q9UBY9 170 aa9.46□□□□□ -0.9
CUX1-202ENST00000292538 TMEM178BH3BS89 294 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms