RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 IGHV1-18A0A0C4DH31 117 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 TNFRSF9Q07011 255 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 BSPH1Q075Z2 132 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 TFF3Q07654 80 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 RPEL1Q2QD12 228 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 ATRAIDQ6UW56 229 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 ZBTB34Q8NCN2 500 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 TMPRSS5Q9H3S3 457 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 MARCH11A6NNE9 402 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 MIC13Q5XKP0 118 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 TGIF2LYQ8IUE0 185 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 TGIF2LXQ8IUE1 241 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 OR5B3Q8NH48 314 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 NEIL1Q96FI4 390 aaPredicted RBP7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 K7EQM0 130 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 CA11O75493 328 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 TMPRSS3P57727 454 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 ABHD12Q8N2K0 398 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 CISD1Q9NZ45 108 aaKnown RBP7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 RFNGQ9Y644 331 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 HSBP1L1C9JCN9 74 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 RAB5AP20339 215 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM166AQ6J272 317 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM216BQ8N7L0 139 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 MEGF10Q96KG7 1140 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 HS3ST6Q96QI5 342 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 OR4C12Q96R67 309 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 PLAUP00749 431 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 B2MP61769 119 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 UBE2L3P68036 154 aaKnown RBP7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 KHDC1LQ5JSQ8 128 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 RNFT1Q5M7Z0 435 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 HCP5Q6MZN7 132 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 COA4Q9NYJ1 87 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 TUBD1Q9UJT1 453 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 PXMP4Q9Y6I8 212 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 DANCRP0C864 163 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 NPY1RP25929 384 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 UCP3P55916 312 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 ASCL5Q7RTU5 278 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM89BQ8N5H3 189 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 ZNF439Q8NDP4 499 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 SLC24A4Q8NFF2 622 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 SFXN3Q9BWM7 321 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 TP53BP1Q12888 1972 aaPredicted RBP7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 CLDN34H7C241 214 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 SNRNP200O75643 2136 aaKnown RBP7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 GAPDHP04406 335 aaKnown RBP7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 MMP7P09237 267 aaPredicted RBP7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 PMCHP20382 165 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 ANOS1P23352 680 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 SLC45A2Q9UMX9 530 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 AMMECR1Q9Y4X0 333 aaPredicted RBP7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 TRIOBPQ9H2D6 2365 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 IQCF6A8MYZ5 107 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 CHEK1O14757 476 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 NHLRC2Q8NBF2 726 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 PCGF1Q9BSM1 259 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 TOLLIPQ9H0E2 274 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 PRO1933Q9H354 126 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 KIAA1324LA8MWY0 1029 aaPredicted RBP7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 IL18BPO95998 194 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 CLEC3BP05452 202 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 OR5I1Q13606 314 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 TEPPQ6URK8 271 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 SLC35E3Q7Z769 313 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 OR4X1Q8NH49 305 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 HEXA-AS1Q9H8Q6 139 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 PRNDQ9UKY0 176 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 INSIG2Q9Y5U4 225 aa7.54□□□□□ -1.2
PDLIM5-222ENST00000615540 ADAMTS9Q9P2N4 1935 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 GFRA3O60609 400 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 FABP1P07148 127 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 BCL2P10415 239 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 CSN1S1P47710 185 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 RND3P61587 244 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 ZNF273Q14593 569 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 BSXQ3C1V8 233 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 ADTRPQ96IZ2 230 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 BARX1Q9HBU1 254 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 ZNF503-AS2A6NEH8 195 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 SUPT4H1P63272 117 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 C10orf113Q5VZT2 155 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 ZDHHC8Q9ULC8 765 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 HSPB1P04792 205 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 CD40P25942 277 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 NTF4P34130 210 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 KRTDAPP60985 99 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 S100A7AQ86SG5 101 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 TAF15Q92804 592 aaKnown RBP eCLIP7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM122AQ96E09 287 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 CYYR1Q96J86 154 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 EAF1Q96JC9 268 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 ZNF785A8K8V0 405 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 ATXN7O15265 892 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 NRN1LQ496H8 165 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 WDR25Q64LD2 544 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 SLC35E4Q6ICL7 350 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 GCSAMQ8N6F7 178 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 OR1L6Q8NGR2 347 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms