RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 CHD3Q12873 2000 aaKnown RBP9.73□□□□□ -0.85
CLN3-238ENST00000569430 PKDREJQ9NTG1 2253 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 A0A1B0GUS0 222 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 ATP5G3P48201 142 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 KCNMB1Q16558 191 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 CEACAM21Q3KPI0 293 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 ALKBH6Q3KRA9 238 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 ZDHHC16Q969W1 377 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 TAAR6Q96RI8 345 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 PSMG3Q9BT73 122 aaPredicted RBP9.73□□□□□ -0.85
CLN3-238ENST00000569430 FOXJ2Q9P0K8 574 aa9.73□□□□□ -0.85
CLN3-238ENST00000569430 SYNGR3O43761 229 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 NAPSAO96009 420 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 C1QTNF9P0C862 333 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 CD1BP29016 333 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 TFF3Q07654 80 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 COTL1Q14019 142 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 PSG5Q15238 335 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 Q56UQ5 140 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 DCAF12Q5T6F0 453 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 MIC13Q5XKP0 118 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 MOB1BQ7L9L4 216 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 ZNF441Q8N8Z8 693 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 ZNF596Q8TC21 504 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 HSD17B10Q99714 261 aaKnown RBP9.72□□□□□ -0.85
CLN3-238ENST00000569430 BET1LQ9NYM9 111 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 PTPRSQ13332 1948 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 hCG_38984A0A1B0GV85 526 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 OR5B21A6NL26 309 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 A8MWP6 167 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 OR5G3P0C626 314 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 IRF2P14316 349 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 IL3RAP26951 378 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 WDR74Q6RFH5 385 aaPredicted RBP9.72□□□□□ -0.85
CLN3-238ENST00000569430 SLC24A4Q8NFF2 622 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 OR1L1Q8NH94 360 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 R3HDM4Q96D70 268 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 C2orf88Q9BSF0 95 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 APC2O95996 2303 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 ARSJQ5FYB0 599 aaPredicted RBP9.72□□□□□ -0.85
CLN3-238ENST00000569430 TMPRSS7Q7RTY8 843 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 RPP25LQ8N5L8 163 aaKnown RBP9.72□□□□□ -0.85
CLN3-238ENST00000569430 TMEM170AQ8WVE7 144 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 MRPL37Q9BZE1 423 aaKnown RBP9.72□□□□□ -0.85
CLN3-238ENST00000569430 STRADBQ9C0K7 418 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 ZNF576Q9H609 170 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 CLEC1BQ9P126 229 aa9.72□□□□□ -0.85
CLN3-238ENST00000569430 SELEP16581 610 aa9.71□□□□□ -0.85
CLN3-238ENST00000569430 FXYD3Q14802 87 aa9.71□□□□□ -0.85
CLN3-238ENST00000569430 DRAM1Q8N682 238 aa9.71□□□□□ -0.85
CLN3-238ENST00000569430 FGFBP3Q8TAT2 258 aa9.71□□□□□ -0.85
CLN3-238ENST00000569430 PLSCR2Q9NRY7 297 aa9.71□□□□□ -0.85
CLN3-238ENST00000569430 A0A0G2JRQ6 117 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 IGHV5-10-1A0A0J9YXX1 117 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 A0A1B0GW64 132 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 SRFP11831 508 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 SELENOVP59797 346 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 RHOBP62745 196 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 CFHR1Q03591 330 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 SPATA45Q537H7 98 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 CARFQ8N187 725 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 RBMXL3Q8N7X1 1067 aaKnown RBP9.71□□□□□ -0.86
CLN3-238ENST00000569430 ST6GALNAC3Q8NDV1 305 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 RBM14Q96PK6 669 aaKnown RBP9.71□□□□□ -0.86
CLN3-238ENST00000569430 MPC1Q9Y5U8 109 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 RHBDL1O75783 438 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 S1PR2O95136 353 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 SELLP14151 372 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 PAFAH1B2P68402 229 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 TMEM54Q969K7 222 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 WNT10AQ9GZT5 417 aa9.71□□□□□ -0.86
CLN3-238ENST00000569430 HELTA6NFD8 242 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 ARL14EPLP0DKL9 152 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 BRS3P32247 399 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 UBE2G1P62253 170 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 TGIF2LYQ8IUE0 185 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 NFAM1Q8NET5 270 aaPredicted RBP9.7□□□□□ -0.86
CLN3-238ENST00000569430 CADM4Q8NFZ8 388 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 ZCCHC14Q8WYQ9 949 aaKnown RBP9.7□□□□□ -0.86
CLN3-238ENST00000569430 DNAJC4Q9NNZ3 241 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 CHCHD2Q9Y6H1 151 aaPredicted RBP9.7□□□□□ -0.86
CLN3-238ENST00000569430 C2orf16Q68DN1 1984 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 J3QT63 122 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 OR2H2O95918 312 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 OR10J4P0C629 311 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 GCSAMLQ5JQS6 135 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 STUMQ69YW2 141 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 LYPD6Q86Y78 171 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 LYPD6BQ8NI32 183 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 SFRP2Q96HF1 295 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 IFITM10A6NMD0 228 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 FAM157AC9JC47 383 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 CTSSP25774 331 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 CHRNB4P30926 498 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 RAB7AP51149 207 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 NMSQ5H8A3 153 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 SLC23A3Q6PIS1 610 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 Q6ZRM9 215 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 ZNF826PQ6ZT77 177 aa9.7□□□□□ -0.86
CLN3-238ENST00000569430 OPN3Q9H1Y3 402 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms