RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 BVESQ8NE79 360 aa13.47□□□□□ -0.25
TSPAN3-208ENST00000560514 BPIFB6Q8NFQ5 453 aa13.47□□□□□ -0.25
TSPAN3-208ENST00000560514 MRPL30Q8TCC3 161 aaKnown RBP13.47□□□□□ -0.25
TSPAN3-208ENST00000560514 PHYHIPQ92561 330 aa13.47□□□□□ -0.25
TSPAN3-208ENST00000560514 SNAPC3Q92966 411 aa13.47□□□□□ -0.25
TSPAN3-208ENST00000560514 BANF2Q9H503 90 aa13.47□□□□□ -0.25
TSPAN3-208ENST00000560514 KLK5Q9Y337 293 aaPredicted RBP13.47□□□□□ -0.25
TSPAN3-208ENST00000560514 PDCD6O75340 191 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 RPS16P62249 146 aaKnown RBP13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 DYRK1AQ13627 763 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 ACSM3Q53FZ2 586 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 SIGIRRQ6IA17 410 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 ZNF343Q6P1L6 599 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 AHSA2Q719I0 299 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 USMG5Q96IX5 58 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 TMEM68Q96MH6 324 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 WFDC10AQ9H1F0 79 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 VCXQ9H320 206 aa13.46□□□□□ -0.25
TSPAN3-208ENST00000560514 CDK1P06493 297 aa13.45□□□□□ -0.26
TSPAN3-208ENST00000560514 GLT8D1Q68CQ7 371 aa13.45□□□□□ -0.26
TSPAN3-208ENST00000560514 OR5AN1Q8NGI8 311 aa13.45□□□□□ -0.26
TSPAN3-208ENST00000560514 MND1Q9BWT6 205 aa13.45□□□□□ -0.26
TSPAN3-208ENST00000560514 COA4Q9NYJ1 87 aa13.45□□□□□ -0.26
TSPAN3-208ENST00000560514 PNMA8CA0A1B0GUJ8 204 aa13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 TRBV12-3P01733 135 aa13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 MECP2P51608 486 aaKnown RBP13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 DEFA5Q01523 94 aa13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 C1orf100Q5SVJ3 147 aa13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 CEMP1Q6PRD7 247 aaPredicted RBP13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 SLC16A13Q7RTY0 426 aa13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 ABHD14BQ96IU4 210 aa13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 NEDD4LQ96PU5 975 aa13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 TINAGL1Q9GZM7 467 aaPredicted RBP13.44□□□□□ -0.26
TSPAN3-208ENST00000560514 KMT2AQ03164 3969 aa13.43□□□□□ -0.26
TSPAN3-208ENST00000560514 ZNF785A8K8V0 405 aa13.43□□□□□ -0.26
TSPAN3-208ENST00000560514 SRMP19623 302 aa13.43□□□□□ -0.26
TSPAN3-208ENST00000560514 SPHARQ15513 63 aa13.43□□□□□ -0.26
TSPAN3-208ENST00000560514 HMGN3Q15651 99 aa13.43□□□□□ -0.26
TSPAN3-208ENST00000560514 KCNG3Q8TAE7 436 aa13.43□□□□□ -0.26
TSPAN3-208ENST00000560514 SCN3BQ9NY72 215 aa13.43□□□□□ -0.26
TSPAN3-208ENST00000560514 NDUFB8O95169 186 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 BPNT1O95861 308 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 APOA2P02652 100 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 RANBP1P43487 201 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 LRRTM1Q86UE6 522 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 PDPNQ86YL7 162 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 DRAXINQ8NBI3 349 aaPredicted RBP13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 SETD6Q8TBK2 473 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 GATAD1Q8WUU5 269 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 PHB2Q99623 299 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 OVOL2Q9BRP0 275 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 GGTLC1Q9BX51 225 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 TM2D1Q9BX74 207 aa13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 RIMS4Q9H426 269 aaPredicted RBP13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 CHMP1AQ9HD42 196 aaPredicted RBP13.42□□□□□ -0.26
TSPAN3-208ENST00000560514 PTGES3LE9PB15 166 aa13.41□□□□□ -0.26
TSPAN3-208ENST00000560514 DEDDO75618 318 aa13.41□□□□□ -0.26
TSPAN3-208ENST00000560514 IGKV1-16P04430 117 aa13.41□□□□□ -0.26
TSPAN3-208ENST00000560514 RPS27AP62979 156 aaKnown RBP13.41□□□□□ -0.26
TSPAN3-208ENST00000560514 DEFB114Q30KQ6 69 aa13.41□□□□□ -0.26
TSPAN3-208ENST00000560514 EDARADDQ8WWZ3 215 aa13.41□□□□□ -0.26
TSPAN3-208ENST00000560514 PARP12Q9H0J9 701 aaKnown RBP13.41□□□□□ -0.26
TSPAN3-208ENST00000560514 LOC102724200A0A096LPH7 203 aaPredicted RBP13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 A0A0J9YWU9 116 aa13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 UCHL1P09936 223 aa13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 SNRPBP14678 240 aaKnown RBP13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 HSD17B12Q53GQ0 312 aa13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 CEACAM19Q7Z692 300 aa13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 FAM46BQ96A09 425 aa13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 TECRQ9NZ01 308 aaKnown RBP13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 ZNF221Q9UK13 617 aa13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 LSM2Q9Y333 95 aaKnown RBP13.4□□□□□ -0.26
TSPAN3-208ENST00000560514 TMEM14DPA8MWL7 114 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 ITGB1BP1O14713 200 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 HTR2CP28335 458 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 IRF3Q14653 427 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 TRAM1Q15629 374 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 ZNF880Q6PDB4 577 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 SULT4A1Q9BR01 284 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 FAAP24Q9BTP7 215 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 TMEM59Q9BXS4 323 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 TPRKBQ9Y3C4 175 aa13.39□□□□□ -0.27
TSPAN3-208ENST00000560514 TRBV6-6A0A0A6YYG2 114 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 MPPED1O15442 326 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 TUSC2O75896 110 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 NAPSAO96009 420 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 APELAP0DMC3 54 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 CEACAM6P40199 344 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 KIR2DS2P43631 304 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 QRFPP83859 136 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 TPBGQ13641 420 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 EXOSC2Q13868 293 aaKnown RBP13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 INSL4Q14641 139 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 RBM48Q5RL73 367 aaKnown RBP13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 LGALS9CQ6DKI2 356 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 LYG2Q86SG7 212 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 FAM89BQ8N5H3 189 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 OR6M1Q8NGM8 313 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 WDR89Q96FK6 387 aaPredicted RBP13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 CYYR1Q96J86 154 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms