RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 UMODL1-AS1Q8N2C9 162 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 JAGN1Q8N5M9 183 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 SLC35G3Q8N808 338 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 ZFP41Q8N8Y5 198 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 ZDHHC22Q8N966 263 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 ZSCAN4Q8NAM6 433 aaPredicted RBP2.06□□□□□ -2.08
VPS13C-208ENST00000559119 MORN4Q8NDC4 146 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 PLPP5Q8NEB5 264 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 OR4K14Q8NGD5 310 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 OR4D9Q8NGE8 314 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 OR5L2Q8NGL0 311 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 OR4C16Q8NGL9 310 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 OR1P1Q8NH06 330 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 OR8U1Q8NH10 309 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 OR51F2Q8NH61 342 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 LKAAEAR1Q8TD35 194 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 GPX8Q8TED1 209 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 MITD1Q8WV92 249 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 PPP1R1CQ8WVI7 109 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 DNAJB3Q8WWF6 145 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 ISOC2Q96AB3 205 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM159Q96B96 161 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 MS4A6EQ96DS6 147 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 TSSK3Q96PN8 268 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 PHB2Q99623 299 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 RNF126Q9BV68 326 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 MS4A8Q9BY19 250 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 SELENOIQ9C0D9 397 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 RERGLQ9H628 205 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 CSNK1G1Q9HCP0 422 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 KCNJ16Q9NPI9 418 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF302Q9NR11 478 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 LYRM2Q9NU23 88 aaPredicted RBP2.06□□□□□ -2.08
VPS13C-208ENST00000559119 DDIT4Q9NX09 232 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 SLC2A8Q9NY64 477 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 FARSAQ9Y285 508 aaKnown RBP2.06□□□□□ -2.08
VPS13C-208ENST00000559119 MRPS33Q9Y291 106 aaKnown RBP2.06□□□□□ -2.08
VPS13C-208ENST00000559119 ASF1AQ9Y294 204 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 OR51B4Q9Y5P0 310 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF831Q5JPB2 1677 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 ROBO1Q9Y6N7 1651 aa2.06□□□□□ -2.08
VPS13C-208ENST00000559119 TRAV30A0A087WSZ9 112 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 A0A0A6YYH2 397 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 IGHV2-70DA0A0C4DH43 119 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 A0A0G2JLM5 398 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 DAPL1A0PJW8 107 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 OR51F1A6NGY5 319 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 A6NJ64 397 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 F5H5T6 163 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PRAMEF26H0Y7S4 382 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 H0Y8G0 127 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 K7EPK0 472 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 DCTN6O00399 190 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CCL25O15444 150 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CDC40O60508 579 aaKnown RBP eCLIP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TNFSF15O95150 251 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 SOX14O95416 240 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 SNAI1O95863 264 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TRBC1P01850 177 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TRGC2P03986 189 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 OPN1SWP03999 348 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 RPN2P04844 631 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ARG1P05089 322 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CXCL1P09341 107 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 SLC35G6P0C7Q6 338 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF735P0CB33 412 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PET100P0DJ07 73 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 MPC1LP0DKB6 136 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 RNASE2P10153 161 aaKnown RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CD37P11049 281 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 LIPCP11150 499 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CSRP1P21291 193 aaKnown RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 RPS4Y1P22090 263 aaKnown RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CDK2P24941 298 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PRSS3P35030 304 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 APLNRP35414 380 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 NAA10P41227 235 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 GPR4P46093 362 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CAPZBP47756 277 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 RAB7AP51149 207 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ATP1B3P54709 279 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CLDN18P56856 261 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TAS2R31P59538 309 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 MAXP61244 160 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 RPS11P62280 158 aaKnown RBP eCLIP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 HBA1P69905 142 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 RHOGP84095 191 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 RPL19P84098 196 aaKnown RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ADIGQ0VDE8 80 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 LAMTOR4Q0VGL1 99 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 IL15RAQ13261 267 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 DHRS2Q13268 280 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CDK5R1Q15078 307 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 EBPQ15125 230 aaKnown RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PRSS8Q16651 343 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PGGHGQ32M88 737 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 C18orf21Q32NC0 220 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF791Q3KP31 576 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ABCA11PQ4W5N1 156 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 KRTAP13-2Q52LG2 175 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms