RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 COL10A1Q03692 680 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 PRAMEF6Q5VXH4 476 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 ACSM6Q6P461 480 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 VWA1Q6PCB0 445 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 TRAT1Q6PIZ9 186 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 BTNL3Q6UXE8 466 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 FDCSPQ8NFU4 85 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 UFSP2Q9NUQ7 469 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 WASF3Q9UPY6 502 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 TMEM250H0YL14 139 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 NKX2-8O15522 239 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 SPINT2O43291 252 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 ZG16O60844 167 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 CECR9P0C854 216 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 PSMB3P49720 205 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 MZT1Q08AG7 82 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 VWC2Q2TAL6 325 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 MBNL2Q5VZF2 373 aaKnown RBP13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 FAM180AQ6UWF9 173 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 IGFL2Q6UWQ7 119 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 OR10G9Q8NGN4 311 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 OR10G7Q8NGN6 311 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 OR13A1Q8NGR1 328 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 SARAFQ96BY9 339 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 GGACTQ9BVM4 153 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 MSL2Q9HCI7 577 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 GAR1Q9NY12 217 aaKnown RBP13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 NAT8Q9UHE5 227 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 PRR14LQ5THK1 2151 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 CACNA1GO43497 2377 aa13.39□□□□□ -0.27
CHMP1A-202ENST00000535997 A0A1B0GWJ7 208 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 PRR33A8MZF0 331 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 IGLV1-44P01699 117 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 SSTR5P35346 364 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 TMEM241Q24JQ0 296 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 C9orf106Q8NAJ2 232 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 SMIM7Q9BQ49 75 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 IFITM10A6NMD0 228 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 LINC00473A8K010 186 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 LINC00587B1AMM8 73 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 SEC14L6B5MCN3 397 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 RBMXL2O75526 392 aaKnown RBP13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 WISP2O76076 250 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 GZMHP20718 246 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 FGF7P21781 194 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 S100A2P29034 98 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 HOXA4Q00056 320 aaPredicted RBP13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 CYP2G1PQ6ZSU1 146 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 ZNF709Q8N972 641 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 ACTR3CQ9C0K3 210 aaPredicted RBP13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 METRNQ9UJH8 293 aa13.38□□□□□ -0.27
CHMP1A-202ENST00000535997 TRAV17A0A0B4J275 112 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 MARCH11A6NNE9 402 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 C15orf65H3BRN8 121 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 LY86O95711 162 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 MDKP21741 143 aaPredicted RBP13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 TPRX1Q8N7U7 411 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 RFESDQ8TAC1 157 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 EDARADDQ8WWZ3 215 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 ZDHHC16Q969W1 377 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 NPCDR1Q9BY65 106 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 PSG11Q9UQ72 335 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 KBTBD11O94819 623 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 PRDX2P32119 198 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 FFAR4Q5NUL3 377 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 ABHD5Q8WTS1 349 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 FAM216AQ8WUB2 273 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 HEATR1Q9H583 2144 aaKnown RBP13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 MANBALQ9NQG1 85 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 FZR1Q9UM11 496 aa13.37□□□□□ -0.27
CHMP1A-202ENST00000535997 ELOA3CA0A087WX78 387 aaPredicted RBP13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 C17orf112F2Z3M2 114 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 TFF1P04155 84 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 NKX6-1P78426 367 aaPredicted RBP13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 FOXF2Q12947 444 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 HNF4GQ14541 408 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 Q3ZCU0 254 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 NCR3LG1Q68D85 454 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 SPNS3Q6ZMD2 512 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 CD177Q8N6Q3 437 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 IGHV3-43A0A0B4J1X8 118 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 IGHV2OR16-5A0A0B4J2B6 119 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 DEFB108AA8MXU0 73 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 AHRRA9YTQ3 701 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 PPP1R2P9O14990 202 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 ST8SIA5O15466 376 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 IGHV2-70P01814 119 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 IGHV3-43DP0DP04 118 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 P2RY6Q15077 328 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 AARDQ4LEZ3 155 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 FAM169BQ8N8A8 192 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 LRRC29Q8WV35 223 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 RAB24Q969Q5 203 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 SLC25A22Q9H936 323 aa13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 ZNF71Q9NQZ8 489 aaPredicted RBP13.36□□□□□ -0.27
CHMP1A-202ENST00000535997 LOC400499M0QZD8 3231 aa13.35□□□□□ -0.27
CHMP1A-202ENST00000535997 FAM90A9PA6NNJ1 464 aa13.35□□□□□ -0.27
CHMP1A-202ENST00000535997 TRGC1P0CF51 173 aa13.35□□□□□ -0.27
CHMP1A-202ENST00000535997 LINC00205P59089 165 aa13.35□□□□□ -0.27
CHMP1A-202ENST00000535997 FAM90A1Q86YD7 464 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms