RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SIRT4Q9Y6E7 314 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-215ENST00000496447 GAGE10A6NGK3 116 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 CRXO43186 299 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-215ENST00000496447 PDE6DO43924 150 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 SS18L1O75177 396 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-215ENST00000496447 CD1BP29016 333 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 BPIFA4PQ86YQ2 179 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 HSF4Q9ULV5 492 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 GDF9O60383 454 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 SPANXN1Q5VSR9 72 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 LAMTOR1Q6IAA8 161 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 ZNF343Q6P1L6 599 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 ABHD12Q8N2K0 398 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 OR10J6PQ8NGY7 276 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 DCTN5Q9BTE1 182 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 SCNM1Q9BWG6 230 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A10PA6NDY2 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A18PA6NE21 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A16PA6NEW6 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A20PA6NIJ5 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A8PA6NJQ4 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A7PA6NKC0 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A22PA8MWA6 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A12PA8MX19 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A5PA8MXJ8 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A23PA8MXZ1 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 DEDDO75618 318 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A15PP0C7V4 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A13PP0C7W8 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A14PP0C7W9 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 FAM90A24PP0C7X0 464 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 KIR2DL2P43627 348 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-215ENST00000496447 NUP37Q8NFH4 326 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 CTHRC1Q96CG8 243 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 MRPL37Q9BZE1 423 aaKnown RBP11.29□□□□□ -0.6
PTPRF-215ENST00000496447 KCNE5Q9UJ90 142 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 IGHV3OR16-10A0A075B7F0 116 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 A0A1W2PP11 408 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 LIPFP07098 398 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 ZNF137PP52743 207 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 Q6ZT83 130 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 PRNTQ86SH4 94 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 GBGT1Q8N5D6 347 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 WNT5BQ9H1J7 359 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 CTXND1A0A1B0GTU2 59 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 ZNF735P0CB33 412 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 APOBEC3AP31941 199 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-215ENST00000496447 CHRNA10Q9GZZ6 450 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 ZNF703Q9H7S9 590 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-215ENST00000496447 NPVFQ9HCQ7 196 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 COL11A1P12107 1806 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-215ENST00000496447 SPTA1P02549 2419 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 SPATA45Q537H7 98 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 GLRX5Q86SX6 157 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 MAP1LC3CQ9BXW4 147 aa11.29□□□□□ -0.6
PTPRF-215ENST00000496447 hCG_38984A0A1B0GV85 526 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 H0Y980 276 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 AREGP15514 252 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 PLP1P60201 277 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 C12orf54Q6X4T0 127 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 DLL3Q9NYJ7 618 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 TRIOBPQ9H2D6 2365 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 SLC25A17O43808 307 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 MELTFP08582 738 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 FAM106AQ4KMX7 169 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 TMEM78Q5T7P6 136 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 DMRTA1Q5VZB9 504 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 MIA3Q5JRA6 1907 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 WNT9BO14905 357 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 NUBP1P53384 320 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 HERVK_113P61574 105 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 ACSF3Q4G176 576 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-215ENST00000496447 ZNF880Q6PDB4 577 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 OR9G1Q8NH87 305 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 IGHV3OR16-12A0A075B7B8 117 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 IGKV3-11P04433 115 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 HSPB1P04792 205 aaKnown RBP11.28□□□□□ -0.6
PTPRF-215ENST00000496447 ISG15P05161 165 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 RFPL3SP0C7P2 107 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 STPG3Q8N7X2 389 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 CLEC7AQ9BXN2 247 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 LRRC37AA6NMS7 1700 aa11.28□□□□□ -0.6
PTPRF-215ENST00000496447 ARFGEF1Q9Y6D6 1849 aa11.27□□□□□ -0.6
PTPRF-215ENST00000496447 HOXA6P31267 233 aa11.27□□□□□ -0.6
PTPRF-215ENST00000496447 MRPL54Q6P161 138 aaKnown RBP11.27□□□□□ -0.6
PTPRF-215ENST00000496447 TRBV5-5A0A0J9YX44 114 aa11.27□□□□□ -0.6
PTPRF-215ENST00000496447 FAM27E3Q08E93 113 aa11.27□□□□□ -0.6
PTPRF-215ENST00000496447 PMCHL1Q16048 86 aa11.27□□□□□ -0.6
PTPRF-215ENST00000496447 CENPVQ7Z7K6 275 aaPredicted RBP11.27□□□□□ -0.6
PTPRF-215ENST00000496447 FAM216AQ8WUB2 273 aa11.27□□□□□ -0.6
PTPRF-215ENST00000496447 OR4C12Q96R67 309 aa11.27□□□□□ -0.6
PTPRF-215ENST00000496447 SDHCQ99643 169 aaPredicted RBP11.27□□□□□ -0.6
PTPRF-215ENST00000496447 SEC16AO15027 2179 aa11.27□□□□□ -0.61
PTPRF-215ENST00000496447 PF4P02776 101 aa11.27□□□□□ -0.61
PTPRF-215ENST00000496447 HINT1P49773 126 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-215ENST00000496447 TIMM23BQ5SRD1 257 aa11.27□□□□□ -0.61
PTPRF-215ENST00000496447 PNKDQ8N490 385 aa11.27□□□□□ -0.61
PTPRF-215ENST00000496447 CELA3AP09093 270 aa11.27□□□□□ -0.61
PTPRF-215ENST00000496447 LMX1BO60663 402 aa11.27□□□□□ -0.61
PTPRF-215ENST00000496447 PITX3O75364 302 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms