RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 OR5H8P0DN80 308 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 NFYAP23511 347 aaPredicted RBP9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 CD1BP29016 333 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 TNFSF8P32971 234 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 S100A5P33763 92 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 RCVRNP35243 200 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 TAS2R46P59540 309 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 BLCAPP62952 87 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 MRPS10P82664 201 aaKnown RBP9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 EGFEM1PQ0D2K5 195 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 DCTN2Q13561 401 aaKnown RBP9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 EBI3Q14213 229 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 HES1Q14469 280 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 RPL39P5Q59GN2 51 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 PYHIN1Q6K0P9 492 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 RBM14Q96PK6 669 aaKnown RBP9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 CITED2Q99967 270 aaPredicted RBP9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 NABP2Q9BQ15 211 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 SLC25A33Q9BSK2 321 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 MRPL20Q9BYC9 149 aaKnown RBP9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 WNT10AQ9GZT5 417 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 RNF150Q9ULK6 438 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 GAB2Q9UQC2 676 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 RBM7Q9Y580 266 aaKnown RBP9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 A6NHS1 94 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 GABARAPH6UMI1 98 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 CTDSPLO15194 276 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 PROP1O75360 226 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 PEX14O75381 377 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 OR2F2O95006 317 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 TMEM11P17152 192 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 FCGR2CP31995 323 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 LUMP51884 338 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 ACTBP60709 375 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 IL18Q14116 193 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 ARSJQ5FYB0 599 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 RNASE12Q5GAN4 147 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 OR5H2Q8NGV7 314 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 OR2T10Q8NGZ9 312 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 OR52I2Q8NH67 350 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 MUC7Q8TAX7 377 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 WIPF2Q8TF74 440 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 FCAMRQ8WWV6 532 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 RCC1LQ96I51 464 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 EAF1Q96JC9 268 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 EHFQ9NZC4 300 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 MTFP1Q9UDX5 166 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 CSMD3Q7Z407 3707 aa9.43□□□□□ -0.9
SQSTM1-206ENST00000466342 IGKV1D-13A0A0B4J2D9 117 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 FABP12A6NFH5 140 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 OR5H14A6NHG9 310 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 ZNF736B4DX44 427 aaPredicted RBP9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 RBBP9O75884 186 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 DUS4LO95620 317 aaKnown RBP9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 MOSP00540 346 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 PMP2P02689 132 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 CT45A6P0DMU7 189 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 CT45A5P0DMU8 189 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 CT45A7P0DMV0 189 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 IGKV1-13P0DP09 117 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 AADACP22760 399 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 HLA-DMAP28067 261 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 HRH1P35367 487 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 DGCR2P98153 550 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 SSBP1Q04837 148 aaKnown RBP9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 DYRK1AQ13627 763 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 Q6ZS46 218 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 OVCH2Q7RTZ1 564 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 LYSMD2Q8IV50 215 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 Q8N6K4 173 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 ZNF645Q8N7E2 425 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 SMIM4Q8WVI0 70 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 GIMAP1Q8WWP7 306 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 C5orf30Q96GV9 206 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 SOSTQ9BQB4 213 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 SDHAF2Q9NX18 166 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 KLK11Q9UBX7 282 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 MOB4Q9Y3A3 225 aa9.42□□□□□ -0.9
SQSTM1-206ENST00000466342 H0YJW9 148 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 J3QRK9 145 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 M0QZK8 103 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 M0R1X1 148 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 SLC22A5O76082 557 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 PPYP01298 95 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 MC5RP33032 325 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 VDAC2P45880 294 aaPredicted RBP9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 RFX2P48378 723 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 HNF4GQ14541 408 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 ACTBL2Q562R1 376 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 ZNF660Q6AZW8 331 aaPredicted RBP9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 FAM131AQ6UXB0 335 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 DRAXINQ8NBI3 349 aaPredicted RBP9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 OR5AN1Q8NGI8 311 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 OR6Q1Q8NGQ2 317 aa9.41□□□□□ -0.9
SQSTM1-206ENST00000466342 HYDINQ4G0P3 5121 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 FGF16O43320 207 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 GSTZ1O43708 216 aaPredicted RBP9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 IGLV2-14P01704 120 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 AMY1AP04745 511 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 AMY2AP04746 511 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms