RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SARAFQ96BY9 339 aa7.01□□□□□ -1.29
CD44-208ENST00000428726 TMEM56Q96MV1 263 aa7.01□□□□□ -1.29
CD44-208ENST00000428726 WFIKKN1Q96NZ8 548 aa7.01□□□□□ -1.29
CD44-208ENST00000428726 SPIN2AQ99865 258 aa7.01□□□□□ -1.29
CD44-208ENST00000428726 SPIN2BQ9BPZ2 258 aa7.01□□□□□ -1.29
CD44-208ENST00000428726 PARP11Q9NR21 331 aa7.01□□□□□ -1.29
CD44-208ENST00000428726 FAM215AQ9Y5M1 114 aa7.01□□□□□ -1.29
CD44-208ENST00000428726 POMT1Q9Y6A1 747 aa7.01□□□□□ -1.29
CD44-208ENST00000428726 TMEM56-RWDD3S4R434 201 aa7.01□□□□□ -1.29
CD44-208ENST00000428726 PKD1L2Q7Z442 2459 aa7□□□□□ -1.29
CD44-208ENST00000428726 EPG5Q9HCE0 2579 aa7□□□□□ -1.29
CD44-208ENST00000428726 MMP23AO75900 390 aa7□□□□□ -1.29
CD44-208ENST00000428726 GRNP28799 593 aaKnown RBP7□□□□□ -1.29
CD44-208ENST00000428726 LILRB2Q8N423 598 aa7□□□□□ -1.29
CD44-208ENST00000428726 CCL17Q92583 94 aa7□□□□□ -1.29
CD44-208ENST00000428726 BOD1Q96IK1 185 aa7□□□□□ -1.29
CD44-208ENST00000428726 ARV1Q9H2C2 271 aa7□□□□□ -1.29
CD44-208ENST00000428726 DUXBA0A1W2PPF3 345 aa7□□□□□ -1.29
CD44-208ENST00000428726 C5orf52A6NGY3 159 aa7□□□□□ -1.29
CD44-208ENST00000428726 FAM157AC9JC47 383 aa7□□□□□ -1.29
CD44-208ENST00000428726 CYB5BO43169 146 aa7□□□□□ -1.29
CD44-208ENST00000428726 ZG16O60844 167 aa7□□□□□ -1.29
CD44-208ENST00000428726 CXCL1P09341 107 aa7□□□□□ -1.29
CD44-208ENST00000428726 SEC11BP0C7V7 166 aa7□□□□□ -1.29
CD44-208ENST00000428726 ZNF585BQ52M93 769 aa7□□□□□ -1.29
CD44-208ENST00000428726 PRR31Q5SQ13 230 aa7□□□□□ -1.29
CD44-208ENST00000428726 ZNF880Q6PDB4 577 aa7□□□□□ -1.29
CD44-208ENST00000428726 SPNS3Q6ZMD2 512 aa7□□□□□ -1.29
CD44-208ENST00000428726 C1orf229Q6ZS94 237 aaPredicted RBP7□□□□□ -1.29
CD44-208ENST00000428726 SSX7Q7RTT5 188 aa7□□□□□ -1.29
CD44-208ENST00000428726 RBMXL3Q8N7X1 1067 aaKnown RBP7□□□□□ -1.29
CD44-208ENST00000428726 NINJ1Q92982 152 aa7□□□□□ -1.29
CD44-208ENST00000428726 A0A1W2PRD5 423 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 A0A1W2PRF3 423 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 A0A1W2PRM7 423 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 CXorf65A6NEN9 183 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 HSPB1P04792 205 aaKnown RBP6.99□□□□□ -1.29
CD44-208ENST00000428726 H2AFB1P0C5Y9 115 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 NDUFB7P17568 137 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 S100GP29377 79 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 PAX9P55771 341 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 UBE2KP61086 200 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 RPS23P62266 143 aaKnown RBP6.99□□□□□ -1.29
CD44-208ENST00000428726 RAB11AP62491 216 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 NKX6-1P78426 367 aaPredicted RBP6.99□□□□□ -1.29
CD44-208ENST00000428726 WDR25Q64LD2 544 aaPredicted RBP6.99□□□□□ -1.29
CD44-208ENST00000428726 NCR3LG1Q68D85 454 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 OR10D4PQ8NGN7 298 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 PFDN5Q99471 154 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 PSENENQ9NZ42 101 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 IGHV3-72A0A0B4J1Y9 119 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 PIGBOS1A0A0B4J2F0 54 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 IFNA17P01571 189 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 TRGC2P03986 189 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 ZNF134P52741 427 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 CTAG1AP78358 180 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 ZNF718Q3SXZ3 478 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 OR8G5Q8NG78 346 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 GALMQ96C23 342 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 RAB39BQ96DA2 213 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 GINS3Q9BRX5 216 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 MRPL37Q9BZE1 423 aaKnown RBP6.99□□□□□ -1.29
CD44-208ENST00000428726 GPR61Q9BZJ8 451 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 ZNF665Q9H7R5 613 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 SLC25A22Q9H936 323 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 KCNIP1Q9NZI2 227 aa6.99□□□□□ -1.29
CD44-208ENST00000428726 HCFC1P51610 2035 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 H3BQ15 152 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 IFNL4K9M1U5 179 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 TMPRSS2O15393 492 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 CRYAAP02489 173 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 DANCRP0C864 163 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 PGA5P0DJD9 388 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 UCP1P25874 307 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 PRDX2P32119 198 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 UBE2G2P60604 165 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 UNQ6494/PRO21346Q6UXR6 183 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 Q8IYB0 196 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 SLC35B3Q9H1N7 401 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 GFOD1Q9NXC2 390 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 POLDIP2Q9Y2S7 368 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 KLF2Q9Y5W3 355 aaPredicted RBP6.98□□□□□ -1.29
CD44-208ENST00000428726 ZANQ9Y493 2812 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 ABCA12Q86UK0 2595 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 LRP5LA4QPB2 252 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 CEBPZOSA8MTT3 80 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 PRR33A8MZF0 331 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 M0R1X1 148 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 IGHG3P01860 377 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 MT-ND4LP03901 98 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 VDAC1P21796 283 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 MDH2P40926 338 aaKnown RBP6.98□□□□□ -1.29
CD44-208ENST00000428726 DLK1P80370 383 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 ZNF295-AS1Q8N0V1 137 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 LYPD6BQ8NI32 183 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 H1FXQ92522 213 aaKnown RBP6.98□□□□□ -1.29
CD44-208ENST00000428726 IL22RA2Q969J5 263 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 MUCL1Q96DR8 90 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 SSX3Q99909 188 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 KPTNQ9Y664 436 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms