RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 EMP1P54849 157 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 IRF3Q14653 427 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 IGHV3-72A0A0B4J1Y9 119 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A26D6RGX4 464 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 SMUG1Q53HV7 270 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 PMS2CLQ68D20 193 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 LOXL4Q96JB6 756 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 MRPS18AQ9NVS2 196 aaKnown RBP11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 HAX1O00165 279 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 FOLR2P14207 255 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 CXorf66Q5JRM2 361 aaPredicted RBP11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 WNT2BQ93097 391 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 A0A1W2PPC1 479 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 HINT1P49773 126 aaPredicted RBP11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 QTRT1Q9BXR0 403 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 CALYQ9NYX4 217 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 TRBV9A0A0B4J1U6 114 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 KLRB1Q12918 225 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 RBM38Q9H0Z9 239 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 MTCL1Q9Y4B5 1905 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 LOC105371242A0A075B767 164 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 GDF9O60383 454 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 MEF2BQ02080 365 aaPredicted RBP11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 STPG1Q5TH74 334 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 ZAR1Q86SH2 424 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 NRIP2Q9BQI9 281 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 PKIBQ9C010 78 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 UQCR10Q9UDW1 63 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 PPIAL4CA0A0B4J2A2 164 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 THY1P04216 161 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 ASAH2BP0C7U1 165 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 PPIAL4GP0DN37 164 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 PEBP1P30086 187 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 MRPL32Q9BYC8 188 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 OR51M1Q9H341 326 aa11.04□□□□□ -0.64
CCDC88C-204ENST00000389857 TMEM262E9PQX1 116 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 DXOO77932 396 aaKnown RBP11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 GCSAMLQ5JQS6 135 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 TMEM229AB2RXF0 380 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 SPINT1O43278 529 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 SAXO1Q8IYX7 474 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 NTN1O95631 604 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 C10orf128Q5T292 105 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 CENPVQ7Z7K6 275 aaPredicted RBP11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 OR4C13Q8NGP0 309 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 A0A0J9YW62 118 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 PTP4A3O75365 173 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 SCTP09683 121 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 TPRX1Q8N7U7 411 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 RNF115Q9Y4L5 304 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 TSPAN13O95857 204 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 TMEM91Q6ZNR0 172 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 OR1P1Q8NH06 330 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 KCNE5Q9UJ90 142 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 KCNK7Q9Y2U2 307 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 KLHDC2Q9Y2U9 406 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 ARL14EPLP0DKL9 152 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 MTURNQ8N3F0 131 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 ZCCHC14Q8WYQ9 949 aaKnown RBP11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 TAF15Q92804 592 aaKnown RBP eCLIP11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 C2orf88Q9BSF0 95 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 CCL27Q9Y4X3 112 aa11.03□□□□□ -0.64
CCDC88C-204ENST00000389857 HLA-DRB1P01911 266 aa11.02□□□□□ -0.64
CCDC88C-204ENST00000389857 ISG15P05161 165 aa11.02□□□□□ -0.64
CCDC88C-204ENST00000389857 NPPCP23582 126 aa11.02□□□□□ -0.64
CCDC88C-204ENST00000389857 A0A1W2PQM1 296 aa11.02□□□□□ -0.64
CCDC88C-204ENST00000389857 PATE3B3GLJ2 98 aa11.02□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM159AQ6UWV7 190 aa11.02□□□□□ -0.64
CCDC88C-204ENST00000389857 ZNF501Q96CX3 271 aaPredicted RBP11.02□□□□□ -0.64
CCDC88C-204ENST00000389857 WNT5BQ9H1J7 359 aa11.02□□□□□ -0.64
CCDC88C-204ENST00000389857 AKIRIN1Q9H9L7 192 aaPredicted RBP11.02□□□□□ -0.64
CCDC88C-204ENST00000389857 ATAD5Q96QE3 1844 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 COL18A1P39060 1754 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 NPIPB8E9PQR5 432 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 FOXS1O43638 330 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 PGLYRP1O75594 196 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 MUC1P15941 1255 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 OR51G1Q8NGK1 321 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 OR10S1Q8NGN2 331 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 STAG3L3P0CL85 134 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 C8orf88P0DMB2 117 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 RND2P52198 227 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 RUNX1Q01196 453 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 DNM1P46Q6ZS02 220 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 TMEM183AQ8IXX5 376 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 SRSF12Q8WXF0 261 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 SPSB4Q96A44 273 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 FAM131CQ96AQ9 280 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 NUTF2P61970 127 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 SELENOHQ8IZQ5 122 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 RGPD3A6NKT7 1758 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 C7orf71A4D174 169 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 PLAUP00749 431 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 SLC25A34Q6PIV7 304 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 OR13C6PQ8NH95 151 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 OR5AC2Q9NZP5 309 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 JPT1Q9UK76 154 aa11.02□□□□□ -0.65
CCDC88C-204ENST00000389857 IGHV4-34P06331 123 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 FTH1P19P0C7X4 201 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 ZNF146Q15072 292 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms