RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 IL3RAP26951 378 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 UBE2G2P60604 165 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 ERVK11-1P61568 191 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 SLC10A1Q14973 349 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 ACOT6Q3I5F7 207 aaPredicted RBP13.75□□□□□ -0.21
SDC4-201ENST00000372733 OR52L2PQ8NGH6 319 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 WDYHV1Q96HA8 205 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 GTF3C1Q12789 2109 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 SRP14P37108 136 aaKnown RBP13.75□□□□□ -0.21
SDC4-201ENST00000372733 ZXDAP98168 799 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 ATP6V1FQ16864 119 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 GCSAMLQ5JQS6 135 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 ZNF709Q8N972 641 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 MAFAQ8NHW3 353 aaPredicted RBP13.75□□□□□ -0.21
SDC4-201ENST00000372733 DERL1Q9BUN8 251 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 WIPI2Q9Y4P8 454 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 PSPNO60542 156 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 RBMXL2O75526 392 aaKnown RBP13.74□□□□□ -0.21
SDC4-201ENST00000372733 TYMSP04818 313 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 BRWD1-AS2P59051 145 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 LINC00205P59089 165 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 ALKBH6Q3KRA9 238 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 LBHQ53QV2 105 aaPredicted RBP13.74□□□□□ -0.21
SDC4-201ENST00000372733 CISD2Q8N5K1 135 aaKnown RBP13.74□□□□□ -0.21
SDC4-201ENST00000372733 LURAP1Q96LR2 239 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.74□□□□□ -0.21
SDC4-201ENST00000372733 B4GALT7Q9UBV7 327 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 C12orf77C9JDV5 145 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 CELA3BP08861 270 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 ATP5G3P48201 142 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 CDC34P49427 236 aaPredicted RBP13.74□□□□□ -0.21
SDC4-201ENST00000372733 PAX5Q02548 391 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 TTTY12Q9BZ98 90 aa13.74□□□□□ -0.21
SDC4-201ENST00000372733 PGPEP1LA6NFU8 196 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 VENTXO95231 258 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 TFF1P04155 84 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 RAC2P15153 192 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 CNN1P51911 297 aaKnown RBP13.73□□□□□ -0.21
SDC4-201ENST00000372733 KCNIP4Q6PIL6 250 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 LINC01551Q86U37 167 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 MCEMP1Q8IX19 187 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 GBGT1Q8N5D6 347 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 GP6Q9HCN6 339 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 POLDIP2Q9Y2S7 368 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 KMT2EQ8IZD2 1858 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 TRAV38-1A0A0B4J264 116 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 SH2D1BO14796 132 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 C1QTNF9P0C862 333 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 GNB1P62873 340 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 DCAF12Q5T6F0 453 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 TEX38Q6PEX7 206 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 ZNF114Q8NC26 417 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 OR2J1Q9GZK6 312 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 AHCTF1Q8WYP5 2266 aa13.73□□□□□ -0.21
SDC4-201ENST00000372733 MLNRO43193 412 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 HAND1O96004 215 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 GRPP07492 148 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 FOSL1P15407 271 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 PPP1CBP62140 327 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 EIF4EBP1Q13541 118 aaPredicted RBP13.72□□□□□ -0.21
SDC4-201ENST00000372733 SSPNQ14714 243 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 C6orf15Q6UXA7 325 aaPredicted RBP13.72□□□□□ -0.21
SDC4-201ENST00000372733 Q8IYB0 196 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 TMEM251Q8N6I4 163 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 BEND2Q8NDZ0 799 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 KCNIP1Q9NZI2 227 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 A0A0U1RQK1 487 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 ZNF320A2RRD8 509 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 DUSP3P51452 185 aaPredicted RBP13.72□□□□□ -0.21
SDC4-201ENST00000372733 SPCS3P61009 180 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 ZNF146Q15072 292 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 CST9LP1Q5W188 147 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 GALMQ96C23 342 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 ATG101Q9BSB4 218 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 LOXL2Q9Y4K0 774 aa13.72□□□□□ -0.21
SDC4-201ENST00000372733 WNT9BO14905 357 aa13.71□□□□□ -0.21
SDC4-201ENST00000372733 TCAPO15273 167 aa13.71□□□□□ -0.21
SDC4-201ENST00000372733 RPL15P61313 204 aaKnown RBP13.71□□□□□ -0.21
SDC4-201ENST00000372733 ZNF124Q15973 351 aa13.71□□□□□ -0.21
SDC4-201ENST00000372733 IQCJQ1A5X6 159 aa13.71□□□□□ -0.21
SDC4-201ENST00000372733 VWC2Q2TAL6 325 aa13.71□□□□□ -0.21
SDC4-201ENST00000372733 TMEM256Q8N2U0 113 aa13.71□□□□□ -0.21
SDC4-201ENST00000372733 Q8N7P7 452 aa13.71□□□□□ -0.21
SDC4-201ENST00000372733 MRPL37Q9BZE1 423 aaKnown RBP13.71□□□□□ -0.21
SDC4-201ENST00000372733 CBLN4Q9NTU7 201 aa13.71□□□□□ -0.21
SDC4-201ENST00000372733 TMEM30CPA0ZSE6 113 aa13.71□□□□□ -0.22
SDC4-201ENST00000372733 NDUFB4O95168 129 aa13.71□□□□□ -0.22
SDC4-201ENST00000372733 HBZP02008 142 aa13.71□□□□□ -0.22
SDC4-201ENST00000372733 CCKARP32238 428 aa13.71□□□□□ -0.22
SDC4-201ENST00000372733 AESQ08117 197 aa13.71□□□□□ -0.22
SDC4-201ENST00000372733 CATR1Q13166 79 aa13.71□□□□□ -0.22
SDC4-201ENST00000372733 OR1C1Q15619 314 aa13.71□□□□□ -0.22
SDC4-201ENST00000372733 ABHD17BQ5VST6 288 aa13.71□□□□□ -0.22
SDC4-201ENST00000372733 H2BFWTQ7Z2G1 175 aa13.71□□□□□ -0.22
SDC4-201ENST00000372733 CXorf67Q86X51 503 aaPredicted RBP13.71□□□□□ -0.22
SDC4-201ENST00000372733 PDGFBP01127 241 aaPredicted RBP13.7□□□□□ -0.22
SDC4-201ENST00000372733 PLGLB1Q02325 96 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 LINC00696Q6ZRV3 163 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 TMPRSS7Q7RTY8 843 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 TMEM105Q8N8V8 129 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms