RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 POC1AQ8NBT0 407 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 NEU4Q8WWR8 484 aaPredicted RBP12.66□□□□□ -0.38
COL17A1-201ENST00000353479 TMEM186Q96B77 213 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 NPVFQ9HCQ7 196 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 PARD6AQ9NPB6 346 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 DEDDO75618 318 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 RUNX1Q01196 453 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 SLC35E3Q7Z769 313 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 KLHDC3Q9BQ90 382 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 NPDC1Q9NQX5 325 aaPredicted RBP12.65□□□□□ -0.38
COL17A1-201ENST00000353479 HEATR5BQ9P2D3 2071 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 C17orf100A8MU93 164 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 PAGE4O60829 102 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 RPS11P62280 158 aaKnown RBP eCLIP12.65□□□□□ -0.38
COL17A1-201ENST00000353479 DRAM1Q8N682 238 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 TEX29Q8N6K0 151 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 TMEM252Q8N6L7 170 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 HIGD1AQ9Y241 93 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 TRAPPC1Q9Y5R8 145 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 SNRPCP09234 159 aaKnown RBP12.65□□□□□ -0.38
COL17A1-201ENST00000353479 OR10J1P30954 320 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 SLC35B1P78383 322 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 KHDC3LQ587J8 217 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 ZIC4Q8N9L1 334 aa12.65□□□□□ -0.38
COL17A1-201ENST00000353479 CLDN34H7C241 214 aa12.65□□□□□ -0.39
COL17A1-201ENST00000353479 RGS13O14921 159 aa12.65□□□□□ -0.39
COL17A1-201ENST00000353479 FAM157CP0CG43 387 aa12.65□□□□□ -0.39
COL17A1-201ENST00000353479 HTN1P15515 57 aa12.65□□□□□ -0.39
COL17A1-201ENST00000353479 EAF1Q96JC9 268 aaPredicted RBP12.65□□□□□ -0.39
COL17A1-201ENST00000353479 SOSTQ9BQB4 213 aa12.65□□□□□ -0.39
COL17A1-201ENST00000353479 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.64□□□□□ -0.39
COL17A1-201ENST00000353479 OR2A4O95047 310 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 FGFBP3Q8TAT2 258 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 WBP1Q96G27 269 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 OR2A7Q96R45 310 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 SSBP3Q9BWW4 388 aaPredicted RBP12.64□□□□□ -0.39
COL17A1-201ENST00000353479 FOXG1P55316 489 aaPredicted RBP12.64□□□□□ -0.39
COL17A1-201ENST00000353479 IZUMO4Q1ZYL8 232 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 RPL39P5Q59GN2 51 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 UNQ6494/PRO21346Q6UXR6 183 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 NLRC5Q86WI3 1866 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 A0A087WV48 116 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 SEC14L6B5MCN3 397 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 C12orf77C9JDV5 145 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 OR1L6Q8NGR2 347 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 FAM216AQ8WUB2 273 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 IL36RNQ9UBH0 155 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 NAT8BQ9UHF3 227 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 CXorf1O96002 111 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 ZNF345Q14585 488 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 OR52M1Q8NGK5 317 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 OR4C13Q8NGP0 309 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 OR10C1Q96KK4 312 aa12.64□□□□□ -0.39
COL17A1-201ENST00000353479 MRPL37Q9BZE1 423 aaKnown RBP12.64□□□□□ -0.39
COL17A1-201ENST00000353479 HYPMO75409 117 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 TMEM30BQ3MIR4 351 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 ZNF385CQ66K41 422 aaPredicted RBP12.63□□□□□ -0.39
COL17A1-201ENST00000353479 ZCCHC24Q8N2G6 241 aaKnown RBP12.63□□□□□ -0.39
COL17A1-201ENST00000353479 FAM168AQ92567 244 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 TM2D1Q9BX74 207 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 PITPNC1Q9UKF7 332 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 CD74P04233 296 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 RPEL1Q2QD12 228 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 CHAC2Q8WUX2 184 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 VAX2Q9UIW0 290 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 IGHV1-18A0A0C4DH31 117 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 CTXND1A0A1B0GTU2 59 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 PRR32B1ATL7 298 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 REG1AP05451 166 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 FAM162BQ5T6X4 162 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 ZNF705AQ6ZN79 300 aaPredicted RBP12.63□□□□□ -0.39
COL17A1-201ENST00000353479 OR4A5Q8NH83 315 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 A0A0G2JK05 382 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 SEC11BP0C7V7 166 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 PAFAH1B2P68402 229 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 STXBP6Q8NFX7 210 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 DCTN5Q9BTE1 182 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 PXMP4Q9Y6I8 212 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 USF1P22415 310 aaPredicted RBP12.63□□□□□ -0.39
COL17A1-201ENST00000353479 OR13A1Q8NGR1 328 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 LYZL4Q96KX0 146 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 RSG1Q9BU20 258 aa12.63□□□□□ -0.39
COL17A1-201ENST00000353479 MMP9P14780 707 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 HSPE1P61604 102 aaKnown RBP12.62□□□□□ -0.39
COL17A1-201ENST00000353479 TMEM37Q8WXS4 190 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 ZNF586Q9NXT0 402 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 NAT8Q9UHE5 227 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 PQLC2LA1A4F0 135 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 C1QTNF12Q5T7M4 302 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 MDS2Q8NDY4 140 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 MS4A10Q96PG2 267 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 MED12Q93074 2177 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 CAMPP49913 170 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 FA2HQ7L5A8 372 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 IGKV3D-15A0A087WSY6 115 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 CORTO00230 105 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 ZG16O60844 167 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 BSXQ3C1V8 233 aa12.62□□□□□ -0.39
COL17A1-201ENST00000353479 HAX1O00165 279 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms