RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 WASHC3Q9Y3C0 194 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 IGHV1-45A0A0A0MS14 117 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 LINC01565O15544 149 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF83P51522 516 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 VN1R17PQ8TDU5 208 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 MRPS18CQ9Y3D5 142 aaKnown RBP8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 IGKV1D-42A0A075B6H8 117 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF708P17019 499 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 IGFBP3P17936 291 aaPredicted RBP8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 LYZP61626 148 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 PSG9Q00887 426 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 OTPQ5XKR4 325 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 Q6ZS52 159 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 HEXA-AS1Q9H8Q6 139 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 DOK5Q9P104 306 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 CENPVL1A0A0U1RR11 272 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 PGLYRP1O75594 196 aaPredicted RBP8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 AREGP15514 252 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 RPL8P62917 257 aaKnown RBP8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 JPT1Q9UK76 154 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 LOC105371267A0A1B0GV96 52 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 DEFB108AA8MXU0 73 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 STPG3Q8N7X2 389 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 LOXL4Q96JB6 756 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 CCL3P10147 92 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 MFAP2P55001 183 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 CLEC12BQ2HXU8 276 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 TMEM52Q8NDY8 209 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 RBKSQ9H477 322 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 ORM2P19652 201 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 TMEM116Q8NCL8 245 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 UCP1P25874 307 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 ZP1P60852 638 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 SPATA45Q537H7 98 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 MEGF10Q96KG7 1140 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF430Q9H8G1 570 aaPredicted RBP8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 CCL1P22362 96 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 GPX4P36969 197 aaPredicted RBP8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 IZUMO4Q1ZYL8 232 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 LINC01559Q495D7 138 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 OR10AG1Q8NH19 301 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 SSMEM1Q8WWF3 244 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 CFPP27918 469 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 SLC35E4Q6ICL7 350 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 MMD2Q8IY49 270 aa8.87□□□□□ -0.99
CCDC88A-202ENST00000336838 TMEM56-RWDD3S4R434 201 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 OBSL1O75147 1896 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 TMPRSS2O15393 492 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 PSG4Q00888 419 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 SLC25A53Q5H9E4 307 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 KCNMB2Q9Y691 235 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 TRAV1-1A0A0B4J248 108 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 PRSS1P07477 247 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 CELA2BP08218 269 aaPredicted RBP8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 SAMD13Q5VXD3 122 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 C1orf210Q8IVY1 113 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 LRTM2Q8N967 370 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF729A6NN14 1252 aaPredicted RBP8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF716A6NP11 495 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 AHRRA9YTQ3 701 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 IGLV3-19P01714 112 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF385CQ66K41 422 aaPredicted RBP8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 DEFB109BQ30KR1 87 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 KRTCAP3Q53RY4 240 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 DCAF10Q5QP82 559 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 RFESDQ8TAC1 157 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 RSG1Q9BU20 258 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 UBE2CO00762 179 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 LYZL6O75951 148 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 SLC25A34Q6PIV7 304 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 CXorf67Q86X51 503 aaPredicted RBP8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 OR4C13Q8NGP0 309 aa8.86□□□□□ -0.99
CCDC88A-202ENST00000336838 TM4SF5O14894 197 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 PRDX2P32119 198 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 C2orf68Q2NKX9 166 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 GATAD1Q8WUU5 269 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 MRPL37Q9BZE1 423 aaKnown RBP8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 CEACAM18A8MTB9 384 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 HLA-DRB1P01911 266 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 CD3EP07766 207 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF714Q96N38 554 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 HSPB9Q9BQS6 159 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 OR2J1Q9GZK6 312 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 COA4Q9NYJ1 87 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 CACNA1HO95180 2353 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 NTN1O95631 604 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 BTCP35070 178 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF880Q6PDB4 577 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 TCF24Q7RTU0 167 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 MRPL18Q9H0U6 180 aaKnown RBP8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 AUP1Q9Y679 476 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 PRR33A8MZF0 331 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 H3BMH7 237 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 SPINK14Q6IE38 97 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 IGLV3-32A0A0A0MS00 114 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 BMPR1BO00238 502 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 NDUFB4O95168 129 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 SCGB1D4Q6XE38 83 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 FGFRL1Q8N441 504 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 C1orf162Q8NEQ5 155 aaPredicted RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms