RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 P2RX4Q99571 388 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 SMDT1Q9H4I9 107 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 PCDH15Q96QU1 1955 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 CACNA1EQ15878 2313 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 SLC25A40Q8TBP6 338 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 CDC42EP3Q9UKI2 254 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 HBZP02008 142 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 OR5R1Q8NH85 324 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 COL6A6A6NMZ7 2263 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 J3QR06 171 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 OGG1O15527 345 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 OR4A8P0C604 315 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 OR13C6PQ8NH95 151 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 RNF122Q9H9V4 155 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 PRR14LQ5THK1 2151 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 EDIL3O43854 480 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 NXPH1P58417 271 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 DPTQ07507 201 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 TMEM52BQ4KMG9 183 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 TCF23Q7RTU1 214 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 PRSS27Q9BQR3 290 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 TMEM222Q9H0R3 208 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 CISD1Q9NZ45 108 aaKnown RBP7.6□□□□□ -1.19
USF3-201ENST00000316407 GAPDHP04406 335 aaKnown RBP7.6□□□□□ -1.19
USF3-201ENST00000316407 HIKESHIQ53FT3 197 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 DANCRP0C864 163 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 CXorf66Q5JRM2 361 aaPredicted RBP7.6□□□□□ -1.19
USF3-201ENST00000316407 GTSF1LQ9H1H1 148 aa7.6□□□□□ -1.19
USF3-201ENST00000316407 PSMB11A5LHX3 300 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 ZNF729A6NN14 1252 aaPredicted RBP7.59□□□□□ -1.19
USF3-201ENST00000316407 LINC00614P0C842 121 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 Q8WTZ3 238 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 SIT1Q9Y3P8 196 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 SIRT4Q9Y6E7 314 aaPredicted RBP7.59□□□□□ -1.19
USF3-201ENST00000316407 NBASA2RRP1 2371 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 KCNE1BA0A087WTH5 132 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 SYNGR1O43759 233 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 MRPS11P82912 194 aaKnown RBP7.59□□□□□ -1.19
USF3-201ENST00000316407 C1QL3Q5VWW1 255 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 H0YIG0 161 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 TNFAIP6P98066 277 aaPredicted RBP7.59□□□□□ -1.19
USF3-201ENST00000316407 NAAAQ02083 359 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 FLRT3Q9NZU0 649 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 C1orf122Q6ZSJ8 110 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 IGHV3OR16-12A0A075B7B8 117 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 TMEM170BQ5T4T1 132 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 TPTE2P1Q5T6R2 138 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 ZNF488Q96MN9 340 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 THAP10Q9P2Z0 257 aaPredicted RBP7.59□□□□□ -1.19
USF3-201ENST00000316407 EGR1P18146 543 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 ROM1Q03395 351 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.59□□□□□ -1.19
USF3-201ENST00000316407 TRBV5-4A0A0C4DH59 114 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 RRHO14718 337 aa7.59□□□□□ -1.19
USF3-201ENST00000316407 ZNF107Q9UII5 783 aaPredicted RBP7.59□□□□□ -1.19
USF3-201ENST00000316407 CRYBB3P26998 211 aa7.59□□□□□ -1.2
USF3-201ENST00000316407 CACNG7P62955 275 aa7.59□□□□□ -1.2
USF3-201ENST00000316407 CENPWQ5EE01 88 aa7.59□□□□□ -1.2
USF3-201ENST00000316407 CT62P0C5K7 136 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 KIR3DL2P43630 455 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 PPP1CAP62136 330 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 C3AR1Q16581 482 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HOGA1Q86XE5 327 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 TMEM45BQ96B21 275 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 PRNDQ9UKY0 176 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 MOB4Q9Y3A3 225 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 MRPS21P82921 87 aaKnown RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 PRICKLE4Q2TBC4 344 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 VSTM2LQ96N03 204 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 LAMTOR2Q9Y2Q5 125 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HRKO00198 91 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 AGFG2O95081 481 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 EFNB1P98172 346 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 MED12LQ86YW9 2145 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 RNASEH2CQ8TDP1 164 aaKnown RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 NHP2Q9NX24 153 aaKnown RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 LINC01555Q8NAE3 123 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 SRSF12Q8WXF0 261 aaKnown RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 RNF186Q9NXI6 227 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HCP5Q6MZN7 132 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 TNFRSF1AP19438 455 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 ANOS1P23352 680 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 SERF2P84101 59 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 MEIG1Q5JSS6 88 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 SSBP4Q9BWG4 385 aaPredicted RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 ALX4Q9H161 411 aaPredicted RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 TRAV8-1A0A0A6YYK1 113 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 A0A1W2PP11 408 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 SERF1AO75920 110 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HMGA1P17096 107 aaKnown RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 DEFB109BQ30KR1 87 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 C5orf66Q9H5L9 145 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 PLAC1Q9HBJ0 212 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 SRSF3P84103 164 aaKnown RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 CIRBPQ14011 172 aaKnown RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 ZNF764Q96H86 408 aaPredicted RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 CEACAM18A8MTB9 384 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST1H2BKO60814 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST1H2BJP06899 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 PRB4P10163 310 aaPredicted RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms