RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SLC2A8Q9NY64 477 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 MYL12BO14950 172 aa11.22□□□□□ -0.61
CCDC88B-201ENST00000301897 WNT4P56705 351 aa11.22□□□□□ -0.61
CCDC88B-201ENST00000301897 OR10K2Q6IF99 312 aa11.22□□□□□ -0.61
CCDC88B-201ENST00000301897 MS4A15Q8N5U1 240 aa11.22□□□□□ -0.61
CCDC88B-201ENST00000301897 ZNF383Q8NA42 475 aa11.22□□□□□ -0.61
CCDC88B-201ENST00000301897 BVESQ8NE79 360 aa11.22□□□□□ -0.61
CCDC88B-201ENST00000301897 SLC35D1Q9NTN3 355 aa11.22□□□□□ -0.61
CCDC88B-201ENST00000301897 OR1A1Q9P1Q5 309 aa11.22□□□□□ -0.61
CCDC88B-201ENST00000301897 HYDINQ4G0P3 5121 aa11.21□□□□□ -0.61
CCDC88B-201ENST00000301897 MECP2P51608 486 aaKnown RBP11.21□□□□□ -0.61
CCDC88B-201ENST00000301897 CD81P60033 236 aa11.21□□□□□ -0.61
CCDC88B-201ENST00000301897 FAM209BQ5JX69 171 aa11.21□□□□□ -0.61
CCDC88B-201ENST00000301897 LINC00322Q6ZN03 302 aaPredicted RBP11.21□□□□□ -0.61
CCDC88B-201ENST00000301897 URM1Q9BTM9 101 aaKnown RBP11.21□□□□□ -0.61
CCDC88B-201ENST00000301897 C12orf4Q9NQ89 552 aa11.21□□□□□ -0.61
CCDC88B-201ENST00000301897 COA4Q9NYJ1 87 aa11.21□□□□□ -0.61
CCDC88B-201ENST00000301897 HSF4Q9ULV5 492 aa11.21□□□□□ -0.61
CCDC88B-201ENST00000301897 TMEM14DPA8MWL7 114 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 M0R1X1 148 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 PROP1O75360 226 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 CD37P11049 281 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 SRMP19623 302 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 RANBP1P43487 201 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 SERPINB10P48595 397 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 SSBP2P81877 361 aaPredicted RBP11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 UNC119Q13432 240 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 DYRK1AQ13627 763 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 ACSM3Q53FZ2 586 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 RBM48Q5RL73 367 aaKnown RBP11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 CYGBQ8WWM9 190 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 HARBI1Q96MB7 349 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 NEURL2Q9BR09 285 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 NICN1Q9BSH3 213 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 PLEKHA3Q9HB20 300 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 RETNQ9HD89 108 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 AK3Q9UIJ7 227 aa11.2□□□□□ -0.62
CCDC88B-201ENST00000301897 IZUMO1RA6ND01 250 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 ERICH4A6NGS2 130 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 FAM223BA6NKX1 122 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 IGLV2-23P01705 113 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 CRYGBP07316 175 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 RRASP10301 218 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 QRFPP83859 136 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 PJVKQ0ZLH3 352 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 RTL8BQ17RB0 113 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 RNLSQ5VYX0 342 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 LRRTM1Q86UE6 522 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 FAM223AQ8IWN6 122 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 OR6M1Q8NGM8 313 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 PHB2Q99623 299 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 Q9N2K0 584 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 C8orf4Q9NR00 106 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 PSORS1C1Q9UIG5 152 aa11.19□□□□□ -0.62
CCDC88B-201ENST00000301897 ALMS1Q8TCU4 4167 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 SHOXO15266 292 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 TUSC2O75896 110 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 TRBV12-3P01733 135 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 SCTP09683 121 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 OR9G9P0C7N8 305 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 SNRPBP14678 240 aaKnown RBP11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 TPBGQ13641 420 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 VMA21Q3ZAQ7 101 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 TMEM177Q53S58 311 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 FAM89BQ8N5H3 189 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 DHRSXQ8N5I4 330 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 NANOGP1Q8N7R0 232 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 ADAD2Q8NCV1 583 aaKnown RBP11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 OR4A4PQ8NGN8 299 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 DYNLRB2Q8TF09 96 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 FAM110AQ9BQ89 295 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 HDHD3Q9BSH5 251 aaPredicted RBP11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 PLCXD1Q9NUJ7 323 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 RDH8Q9NYR8 311 aa11.18□□□□□ -0.62
CCDC88B-201ENST00000301897 PLECQ15149 4684 aaKnown RBP11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 A0A0A6YYD4 124 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 MSGN1A6NI15 193 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 TRDCB7Z8K6 153 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 MPPED1O15442 326 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 CREBL2O60519 120 aaPredicted RBP11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 DIRAS3O95661 229 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 LINC00205P59089 165 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 ATP5G2Q06055 141 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 INSL4Q14641 139 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 CD300EQ496F6 205 aaPredicted RBP11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 HSD17B12Q53GQ0 312 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 LAIR2Q6ISS4 152 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 TEX45Q8NA69 505 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 KCTD12Q96CX2 325 aaKnown RBP11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 CMSS1Q9BQ75 279 aaKnown RBP11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 LPAR5Q9H1C0 372 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 SRD5A3Q9H8P0 318 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 TECRQ9NZ01 308 aaKnown RBP11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 ADAM30Q9UKF2 790 aa11.17□□□□□ -0.62
CCDC88B-201ENST00000301897 RBMY1BA6NDE4 496 aaKnown RBP11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 RBMY1EA6NEQ0 496 aaKnown RBP11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 ZNF785A8K8V0 405 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 OR11H12B2RN74 326 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 BMPR1BO00238 502 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 SOCS1O15524 211 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms