RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 PLPPR2Q96GM1 343 aa11.02□□□□□ -0.65
USP40-201ENST00000251722 F5P12259 2224 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 CDKN1BP46527 198 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 JMJD8Q96S16 334 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 TMEM74BQ9NUR3 256 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 JPT1Q9UK76 154 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 A0A1W2PRS3 328 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 H3BP45 60 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 IGKV3-11P04433 115 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 PTGDSP41222 190 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 PSMB2P49721 201 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 MVDP53602 400 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 PDCD1Q15116 288 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 C10orf113Q5VZT2 155 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 C1QL4Q86Z23 238 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 OR1B1Q8NGR6 318 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 PCGF1Q9BSM1 259 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 C19orf67A6NJJ6 358 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 ONECUT2O95948 504 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 RPL27AP46776 148 aaKnown RBP11.01□□□□□ -0.65
USP40-201ENST00000251722 GAPTQ8N292 157 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 KIR3DL2P43630 455 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 TDGF1P3P51864 188 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 VAX1Q5SQQ9 334 aa11.01□□□□□ -0.65
USP40-201ENST00000251722 VSIG8P0DPA2 414 aa11□□□□□ -0.65
USP40-201ENST00000251722 C16orf82Q7Z2V1 217 aa11□□□□□ -0.65
USP40-201ENST00000251722 WDR31Q8NA23 367 aa11□□□□□ -0.65
USP40-201ENST00000251722 TXNDC17Q9BRA2 123 aa11□□□□□ -0.65
USP40-201ENST00000251722 TRIP12Q14669 1992 aaPredicted RBP11□□□□□ -0.65
USP40-201ENST00000251722 A0A087WWC5 75 aa11□□□□□ -0.65
USP40-201ENST00000251722 RPL7P18124 248 aaKnown RBP11□□□□□ -0.65
USP40-201ENST00000251722 MESP2Q0VG99 397 aa11□□□□□ -0.65
USP40-201ENST00000251722 RTN4RL2Q86UN3 420 aa11□□□□□ -0.65
USP40-201ENST00000251722 C10orf126Q8N4M7 172 aa11□□□□□ -0.65
USP40-201ENST00000251722 PGLYRP3Q96LB9 341 aa11□□□□□ -0.65
USP40-201ENST00000251722 GON4LQ3T8J9 2241 aa11□□□□□ -0.65
USP40-201ENST00000251722 TMEM8BA6NDV4 472 aa11□□□□□ -0.65
USP40-201ENST00000251722 ESDP10768 282 aa11□□□□□ -0.65
USP40-201ENST00000251722 SELLP14151 372 aa11□□□□□ -0.65
USP40-201ENST00000251722 GLRXP35754 106 aa11□□□□□ -0.65
USP40-201ENST00000251722 FAM90A1Q86YD7 464 aa11□□□□□ -0.65
USP40-201ENST00000251722 OR10S1Q8NGN2 331 aa11□□□□□ -0.65
USP40-201ENST00000251722 ITLN1Q8WWA0 313 aa11□□□□□ -0.65
USP40-201ENST00000251722 NPDC1Q9NQX5 325 aaPredicted RBP11□□□□□ -0.65
USP40-201ENST00000251722 ST6GALNAC2Q9UJ37 374 aa11□□□□□ -0.65
USP40-201ENST00000251722 PLXNA1Q9UIW2 1896 aa11□□□□□ -0.65
USP40-201ENST00000251722 FAM157AC9JC47 383 aa11□□□□□ -0.65
USP40-201ENST00000251722 TEPPQ6URK8 271 aa11□□□□□ -0.65
USP40-201ENST00000251722 ZNF703Q9H7S9 590 aaPredicted RBP11□□□□□ -0.65
USP40-201ENST00000251722 SOCS1O15524 211 aa11□□□□□ -0.65
USP40-201ENST00000251722 RPS4XP62701 263 aaKnown RBP11□□□□□ -0.65
USP40-201ENST00000251722 RIGQ13278 110 aa11□□□□□ -0.65
USP40-201ENST00000251722 TMEM255AQ5JRV8 349 aa11□□□□□ -0.65
USP40-201ENST00000251722 SPCS1Q9Y6A9 102 aa11□□□□□ -0.65
USP40-201ENST00000251722 LOC105371242A0A075B767 164 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 FAM90A26D6RGX4 464 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 J3QR06 171 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 ZNF645Q8N7E2 425 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 OR9G1Q8NH87 305 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 TRBV5-5A0A0J9YX44 114 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 CLDN14O95500 239 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 SMIM13P0DJ93 91 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 ORM2P19652 201 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 EBLN2Q6P2I7 272 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 POC1AQ8NBT0 407 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 HIGD1AQ9Y241 93 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 IGLV1-36A0A0B4J1U3 117 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 F5H697 171 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 H0Y980 276 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 CA1P00915 261 aaPredicted RBP10.99□□□□□ -0.65
USP40-201ENST00000251722 DNM1P46Q6ZS02 220 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 SVIPQ8NHG7 77 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 IGHV1-69-2A0A0G2JMI3 117 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 OR2A4O95047 310 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 UQCRFS1P47985 274 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 FAM106AQ4KMX7 169 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 OR2A7Q96R45 310 aa10.99□□□□□ -0.65
USP40-201ENST00000251722 IGLV3-12A0A075B6K2 115 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 A6NNC1 897 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 ZNF506Q5JVG8 444 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 ZNF880Q6PDB4 577 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 RGP1Q92546 391 aaPredicted RBP10.98□□□□□ -0.65
USP40-201ENST00000251722 CXorf1O96002 111 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 GYPAP02724 150 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 SCGB1A1P11684 91 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 CCL8P80075 99 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 CDCP2Q5VXM1 449 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 FDX2Q6P4F2 183 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 TMEM105Q8N8V8 129 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 PRSS3P2Q8NHM4 247 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 ATP6V0BQ99437 205 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 SCNM1Q9BWG6 230 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 CCL28Q9NRJ3 127 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 ZNFX1Q9P2E3 1918 aaKnown RBP10.98□□□□□ -0.65
USP40-201ENST00000251722 C1orf194Q5T5A4 169 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 UBALD1Q8TB05 177 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 METTL26Q96S19 204 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 PRDM6Q9NQX0 595 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 ZFAND6Q6FIF0 208 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 MUC15Q8N387 334 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms