RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CNRIP1Q96F85 164 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-201ENST00000011700 C16orf92Q96LL3 132 aa5.31□□□□□ -1.56
VPS13D-201ENST00000011700 MRPL16Q9NX20 251 aaKnown RBP5.31□□□□□ -1.56
VPS13D-201ENST00000011700 WDR90Q96KV7 1748 aa5.31□□□□□ -1.56
VPS13D-201ENST00000011700 CEACAM18A8MTB9 384 aa5.31□□□□□ -1.56
VPS13D-201ENST00000011700 RPL36A-HNRNPH2H7BZ11 118 aa5.31□□□□□ -1.56
VPS13D-201ENST00000011700 OR51B2Q9Y5P1 312 aa5.31□□□□□ -1.56
VPS13D-201ENST00000011700 DLL1O00548 723 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 HCRTO43612 131 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 ARG1P05089 322 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 DANCRP0C864 163 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 FAM157BP0CG42 384 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 CD40P25942 277 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 ERV3-1Q14264 604 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 ZNF441Q8N8Z8 693 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 DDB2Q92466 427 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 RAX2Q96IS3 184 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 SMIM8Q96KF7 97 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 MGST3O14880 152 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 GUCA2BQ16661 112 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 OR1P1Q8NH06 330 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 RNASEH2CQ8TDP1 164 aaKnown RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 COX14Q96I36 57 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 PRDM14Q9GZV8 571 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 HKR1P10072 659 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 ZNF25P17030 456 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 TCTN1Q2MV58 587 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 Q6ZPB1 254 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 ATP5L2Q7Z4Y8 100 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 OR4X2Q8NGF9 303 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 TMEM186Q96B77 213 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 RCC2Q9P258 522 aaKnown RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 FUT9Q9Y231 359 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 MUC6Q6W4X9 2439 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 CA1P00915 261 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 TRGC2P03986 189 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 PMP22Q01453 160 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 C9orf135Q5VTT2 229 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 MAFAQ8NHW3 353 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 ZNF430Q9H8G1 570 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 TCRBV16S1A1N1A0A5B0 115 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 OR11G2Q8NGC1 345 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 CLDND2Q8NHS1 167 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 EXPH5Q8NEV8 1989 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 NUP210LQ5VU65 1888 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 KBTBD11O94819 623 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 ZNF32P17041 273 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 SLC25A35Q3KQZ1 300 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 ZNF414Q96IQ9 312 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 METTL12A8MUP2 240 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 RBM11P57052 281 aaKnown RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 RELTQ969Z4 430 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 TIMP4Q99727 224 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 NXT2Q9NPJ8 142 aaKnown RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 HIVEP2P31629 2446 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 LOC107984156A0A0G2JMH3 177 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 SHISA7A6NL88 538 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 ARL17AQ8IVW1 177 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 NUDT8Q8WV74 236 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 AQP3Q92482 292 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 PARP12Q9H0J9 701 aaKnown RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 NCOR1P1Q9H4R4 102 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 MED29Q9NX70 200 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 CEACAM5P06731 702 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 CLEC2LP0C7M8 214 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 TMEM50BP56557 158 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 RHOGP84095 191 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 CLEC2AQ6UVW9 174 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 OR8A1Q8NGG7 326 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 SLC25A10Q9UBX3 287 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-201ENST00000011700 CLDN16Q9Y5I7 305 aa5.3□□□□□ -1.56
VPS13D-201ENST00000011700 PRSS2P07478 247 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 CLEC18BQ6UXF7 455 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 GPA33Q99795 319 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 PARD6GQ9BYG4 376 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-201ENST00000011700 FLRT3Q9NZU0 649 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 THSD7AQ9UPZ6 1657 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 ZNF729A6NN14 1252 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-201ENST00000011700 H3BP45 60 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 MT-CO3P00414 261 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 CA6P23280 308 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 MFAP4P55083 255 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 EWSR1Q01844 656 aaKnown RBP eCLIP5.29□□□□□ -1.56
VPS13D-201ENST00000011700 HIKESHIQ53FT3 197 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 FAM109BQ6ICB4 259 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-201ENST00000011700 ATG4DQ86TL0 474 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-201ENST00000011700 LINC00869P0C866 280 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 DNLZQ5SXM8 178 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 ASTLQ6HA08 431 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-201ENST00000011700 NIT1Q86X76 327 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 NUP37Q8NFH4 326 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 PARLQ9H300 379 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 OR4C45A6NMZ5 311 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 F2Z2F3 143 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 SLC23A3Q6PIS1 610 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 KIR3DL3Q8N743 410 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 C1orf162Q8NEQ5 155 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-201ENST00000011700 LRRC61Q9BV99 259 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 A0A096LPE4 126 aa5.29□□□□□ -1.56
VPS13D-201ENST00000011700 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms