RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 H3BUT2 72 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 H3BVH4 76 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TMPRSS2O15393 492 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 SOCS1O15524 211 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 GABRG2P18507 467 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 FNDC7Q5VTL7 733 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF664Q8N3J9 261 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 OR1N1Q8NGS0 311 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 DOK4Q8TEW6 326 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 RNF208Q9H0X6 261 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 NXT2Q9NPJ8 142 aaKnown RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 H3BRM9 83 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 M0R3E3 92 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 PIN1P1O15428 100 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 DCAF12Q5T6F0 453 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 OR8A1Q8NGG7 326 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 PAAF1Q9BRP4 392 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 A0A1W2PRE2 83 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 K7EP13 123 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 SRFP11831 508 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 CD46P15529 392 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 MLF1P58340 268 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 C2orf27AQ580R0 203 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TEX38Q6PEX7 206 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 NINQ8N4C6 2090 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 RAMP3O60896 148 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 PSG9Q00887 426 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 SNHG12Q9BXW3 62 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 PCM1Q15154 2024 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 RUNX1Q01196 453 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 CIRBPQ14011 172 aaKnown RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 GCSAMQ8N6F7 178 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 LRRC75AQ8NAA5 344 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF479Q96JC4 524 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TRAV38-1A0A0B4J264 116 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 POU2F2P09086 479 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 RPL30P62888 115 aaKnown RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF816Q0VGE8 651 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 GAB4Q2WGN9 574 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF718Q3SXZ3 478 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 RBPMS2Q6ZRY4 209 aaKnown RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 PLSCR4Q9NRQ2 329 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 GLRX2Q9NS18 164 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 A0A1W2PQM1 296 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 LIPT2A6NK58 231 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 GNG7O60262 68 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 PSG3Q16557 428 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 FBXO46Q6PJ61 603 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-220ENST00000641603 OR4D11Q8NGI4 311 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 ABHD3Q8WU67 409 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 RPRMQ9NS64 109 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 SLURP2P0DP57 97 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TBR1Q16650 682 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 BHLHA9Q7RTU4 235 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM178AQ8NBL3 297 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 GPR146Q96CH1 333 aa4.04□□□□□ -1.76
SCN1A-220ENST00000641603 SYNGR1O43759 233 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 FGF12P61328 243 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 FUT5Q11128 374 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 MMDQ15546 238 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 CD300EQ496F6 205 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF645Q8N7E2 425 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 COX14Q96I36 57 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 IL36RNQ9UBH0 155 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 EVPLQ92817 2033 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 hADV38S2A0JD32 116 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 EREGO14944 169 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 NR0B2Q15466 257 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 TPTE2P1Q5T6R2 138 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 OR10AC1Q8NH08 325 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 WBP2Q969T9 261 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 TSACCQ96A04 125 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 SPACA5Q96QH8 159 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 LOC102724200A0A096LPH7 203 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 IGHV2-70DA0A0C4DH43 119 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 C1QL1O75973 258 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 CBLN1P23435 193 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 MEOX1P50221 254 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 NRN1LQ496H8 165 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 C1orf185Q5T7R7 199 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 FAM27BQ5VT28 67 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 DLX4Q92988 240 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 ZFC3H1O60293 1989 aaKnown RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 IGLV1-36A0A0B4J1U3 117 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 FAM231BA6NCW3 169 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 HBDP02042 147 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF146Q15072 292 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 TAL2Q16559 108 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 RHBDD2Q6NTF9 364 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 ZADH2Q8N4Q0 377 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF296Q8WUU4 475 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 RAB1BQ9H0U4 201 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 S100A4P26447 101 aaKnown RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 C10orf111Q8N326 155 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 OR1L8Q8NGR8 309 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 THAP3Q8WTV1 239 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 FOXB1Q99853 325 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 CCL28Q9NRJ3 127 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 FOCADQ5VW36 1801 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms