RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 C5orf24Q7Z6I8 188 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 SELENOHQ8IZQ5 122 aaKnown RBP8.7□□□□□ -1.02
CLN3-248ENST00000636355 LHFPL5Q8TAF8 219 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 OR10C1Q96KK4 312 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 PRELID3BQ9Y3B1 194 aa8.7□□□□□ -1.02
CLN3-248ENST00000636355 YLPM1P49750 1951 aaKnown RBP8.7□□□□□ -1.02
CLN3-248ENST00000636355 FAM90A26D6RGX4 464 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 L7N2F9 121 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 M0R1W7 72 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 ST8SIA5O15466 376 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 TNFSF12O43508 249 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 DEDDO75618 318 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 RLN2P04090 185 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 LIPFP07098 398 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 MMP9P14780 707 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 IL3RAP26951 378 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 S100A11P31949 105 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 DUTP33316 252 aaKnown RBP8.69□□□□□ -1.02
CLN3-248ENST00000636355 CDKN1AP38936 164 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 THBS3P49746 956 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 AKR1C2P52895 323 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 PRAMEF5Q5TYX0 476 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 LYZL2Q7Z4W2 148 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 LY6G5BQ8NDX9 201 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 OR4D5Q8NGN0 318 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 GRPEL2Q8TAA5 225 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 TCTEX1D2Q8WW35 142 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 WDR89Q96FK6 387 aaPredicted RBP8.69□□□□□ -1.02
CLN3-248ENST00000636355 C5orf30Q96GV9 206 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 S1PR3Q99500 378 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 SSBP3Q9BWW4 388 aaPredicted RBP8.69□□□□□ -1.02
CLN3-248ENST00000636355 PLEKHA2Q9HB19 425 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 PRR13Q9NZ81 148 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 MBD2Q9UBB5 411 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 SESN1Q9Y6P5 492 aa8.69□□□□□ -1.02
CLN3-248ENST00000636355 SAA2-SAA4A0A096LPE2 208 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 MPTX1A8MV57 137 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 LYNX1G3V0Z9 82 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 ARPC5O15511 151 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 ST8SIA3O43173 380 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 TXNL1O43396 289 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 LY86O95711 162 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 SAA2P0DJI9 122 aaPredicted RBP8.68□□□□□ -1.02
CLN3-248ENST00000636355 IGHV1-8P0DP01 117 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 LYNX1P0DP58 116 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 OMGP23515 440 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 NUP62P37198 522 aaPredicted RBP8.68□□□□□ -1.02
CLN3-248ENST00000636355 PDLIM4P50479 330 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 GNB2P62879 340 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 RAB32Q13637 225 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 ZNF585BQ52M93 769 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 Q5BKY6 102 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 CT45A1Q5HYN5 189 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 AVPI1Q5T686 147 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 C1orf122Q6ZSJ8 110 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 ZNF833PQ6ZTB9 187 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 ACOT7LQ6ZUV0 252 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 ZNF546Q86UE3 836 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 SPAG16Q8N0X2 631 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 KCNRGQ8N5I3 272 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 FAM71E2Q8N5Q1 922 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 INO80EQ8NBZ0 244 aaPredicted RBP8.68□□□□□ -1.02
CLN3-248ENST00000636355 OR4S2Q8NH73 311 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 OR9G1Q8NH87 305 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 CT45A3Q8NHU0 189 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 DDB2Q92466 427 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 RRNAD1Q96FB5 475 aaKnown RBP8.68□□□□□ -1.02
CLN3-248ENST00000636355 SEC22AQ96IW7 307 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 AQP10Q96PS8 301 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 AIFM2Q9BRQ8 373 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 MFFQ9GZY8 342 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 UNKLQ9H9P5 680 aaKnown RBP8.68□□□□□ -1.02
CLN3-248ENST00000636355 AMMECR1Q9Y4X0 333 aaPredicted RBP8.68□□□□□ -1.02
CLN3-248ENST00000636355 MMP24Q9Y5R2 645 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 POMT1Q9Y6A1 747 aa8.68□□□□□ -1.02
CLN3-248ENST00000636355 TENM4Q6N022 2769 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 PPIAL4CA0A0B4J2A2 164 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 RNF222A6NCQ9 220 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 E5RGE8 158 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 M0R1X1 148 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 ENSAO43768 121 aaKnown RBP8.67□□□□□ -1.02
CLN3-248ENST00000636355 PITX3O75364 302 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 HPRT1P00492 218 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 IGHV2-5P01817 119 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 P0C879 139 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 PPIAL4GP0DN37 164 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 RRASP10301 218 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 CCL3L1P16619 93 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 PVALBP20472 110 aaPredicted RBP8.67□□□□□ -1.02
CLN3-248ENST00000636355 NFYBP25208 207 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 NKX2-1P43699 371 aaPredicted RBP8.67□□□□□ -1.02
CLN3-248ENST00000636355 DSCR9P59020 149 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 ERVFRD-1P60508 538 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 LTC4SQ16873 150 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 LGALSLQ3ZCW2 172 aaPredicted RBP8.67□□□□□ -1.02
CLN3-248ENST00000636355 LRRC37A5PQ49AS3 106 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 AARDQ4LEZ3 155 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 ZNF767PQ75MW2 155 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 ODF3L1Q8IXM7 274 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 FGFRL1Q8N441 504 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms