RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CNEP1R1Q8N9A8 125 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 NANOS1Q8WY41 292 aaKnown RBP9.43□□□□□ -0.9
CLN3-244ENST00000636147 TMEM56Q96MV1 263 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 GPR35Q9HC97 309 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 OR6C3Q9NZP0 311 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 BOKQ9UMX3 212 aaPredicted RBP9.43□□□□□ -0.9
CLN3-244ENST00000636147 TMEM56-RWDD3S4R434 201 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 AKAP6Q13023 2319 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 C1QTNF9P0C862 333 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 GPR12P47775 334 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 NXPH1P58417 271 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 COTL1Q14019 142 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 IGFBP7Q16270 282 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 LYPD6Q86Y78 171 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 KMT5CQ86Y97 462 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 SNHG12Q9BXW3 62 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 OCIAD1Q9NX40 245 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 THSD7BQ9C0I4 1608 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 EP300Q09472 2414 aaPredicted RBP9.43□□□□□ -0.9
CLN3-244ENST00000636147 SLC17A3O00476 420 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 ZIC3O60481 467 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 LIFP15018 202 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 IL3RAP26951 378 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 CAMPP49913 170 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 KLHDC1Q8N7A1 406 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 LYPD6BQ8NI32 183 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 SRXN1Q9BYN0 137 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 OPN3Q9H1Y3 402 aaPredicted RBP9.43□□□□□ -0.9
CLN3-244ENST00000636147 A0A0G2JRQ6 117 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 NAPSAO96009 420 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 ABHD14BQ96IU4 210 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 WNT5BQ9H1J7 359 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 DUSP13Q9UII6 198 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 POLDIP2Q9Y2S7 368 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 CADP27708 2225 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 SPINT2O43291 252 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 GDF9O60383 454 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 ATP5G3P48201 142 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 GNB2P62879 340 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 LRRC75BQ2VPJ9 315 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 TEX38Q6PEX7 206 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 OR8I2Q8N0Y5 310 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 RPP25LQ8N5L8 163 aaKnown RBP9.42□□□□□ -0.9
CLN3-244ENST00000636147 ST6GALNAC3Q8NDV1 305 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 TMEM170AQ8WVE7 144 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 MRPL18Q9H0U6 180 aaKnown RBP9.42□□□□□ -0.9
CLN3-244ENST00000636147 DNAJC4Q9NNZ3 241 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 A0A1B0GW64 132 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 TMEM250H0YL14 139 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 M0R1X1 148 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 SRP14P37108 136 aaKnown RBP9.42□□□□□ -0.9
CLN3-244ENST00000636147 FABP6P51161 128 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 TFF3Q07654 80 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 RNASEKQ6P5S7 137 aaKnown RBP9.42□□□□□ -0.9
CLN3-244ENST00000636147 ERASQ7Z444 233 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 OR4P4Q8NGL7 312 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 ZDHHC16Q969W1 377 aa9.42□□□□□ -0.9
CLN3-244ENST00000636147 GNG4P50150 75 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 C3AR1Q16581 482 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 ATP6V1FQ16864 119 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 HES3Q5TGS1 186 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 DUSP23Q9BVJ7 150 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 WNT10AQ9GZT5 417 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 SPTBN1Q01082 2364 aaKnown RBP9.41□□□□□ -0.9
CLN3-244ENST00000636147 PI4KAP42356 2102 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 TIMM8AO60220 97 aaPredicted RBP9.41□□□□□ -0.9
CLN3-244ENST00000636147 CEBPDP49716 269 aaPredicted RBP9.41□□□□□ -0.9
CLN3-244ENST00000636147 SPATA45Q537H7 98 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 Q56UQ5 140 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 VHLLQ6RSH7 139 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 TUSC5Q8IXB3 177 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 LRFN3Q9BTN0 628 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 DLL3Q9NYJ7 618 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 ANAPC10Q9UM13 185 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 UNC80Q8N2C7 3258 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 IRF2P14316 349 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 CHRNB4P30926 498 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 CXCL12P48061 93 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 RAB7AP51149 207 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 ARL16Q0P5N6 197 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 ZNF441Q8N8Z8 693 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 FGFBP3Q8TAT2 258 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 ZNF596Q8TC21 504 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 PSMG3Q9BT73 122 aaPredicted RBP9.41□□□□□ -0.9
CLN3-244ENST00000636147 FZR1Q9UM11 496 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 CACNA1HO95180 2353 aa9.41□□□□□ -0.9
CLN3-244ENST00000636147 EPOPA6NHQ4 379 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 SELEP16581 610 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 GNG10P50151 68 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 FXYD3Q14802 87 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 KCNMB1Q16558 191 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 RPEL1Q2QD12 228 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 C10orf128Q5T292 105 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 LYSMD4Q5XG99 296 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 MIC13Q5XKP0 118 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 Q6ZRM9 215 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 TCTEX1D1Q8N7M0 179 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 OR52L2PQ8NGH6 319 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 OR5B3Q8NH48 314 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 ZCCHC14Q8WYQ9 949 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms