RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 EAF1Q96JC9 268 aaPredicted RBP13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 AKR1E2Q96JD6 320 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 ABHD1Q96SE0 405 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 OR2D2Q9H210 308 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 C16orf95Q9H693 158 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 RANBP3Q9H6Z4 567 aaPredicted RBP13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 PALMDQ9NP74 551 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 MMP24Q9Y5R2 645 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 TENM1Q9UKZ4 2725 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 CT45A6P0DMU7 189 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 CT45A5P0DMU8 189 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 CT45A7P0DMV0 189 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 TMEM11P17152 192 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 NAT1P18440 290 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 ZNF45Q02386 682 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 OR4C13Q8NGP0 309 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 RBMXL1Q96E39 390 aaKnown RBP13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 DIRAS2Q96HU8 199 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 BEX1Q9HBH7 125 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 NECAP2Q9NVZ3 263 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 OR2W1Q9Y3N9 320 aa13.21□□□□□ -0.29
CCDC28A-202ENST00000611852 A0A1B0GUS0 222 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 CLPSL1A2RUU4 121 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 SULT1C2O00338 296 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 TUSC2O75896 110 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 ETV6P41212 452 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 BLCAPP62952 87 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 C12orf54Q6X4T0 127 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 Q8N6K4 173 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 OR2T10Q8NGZ9 312 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 GAB2Q9UQC2 676 aa13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 RBM7Q9Y580 266 aaKnown RBP13.2□□□□□ -0.3
CCDC28A-202ENST00000611852 MOSP00540 346 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 AMY1AP04745 511 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 AMY2AP04746 511 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 OR5H8P0DN80 308 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 CDK10Q15131 360 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 LYSMD2Q8IV50 215 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 DRAXINQ8NBI3 349 aaPredicted RBP13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 C15orf40Q8WUR7 153 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 C5orf30Q96GV9 206 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 ZNF702PQ9H963 129 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 SDHAF2Q9NX18 166 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 MOB4Q9Y3A3 225 aa13.19□□□□□ -0.3
CCDC28A-202ENST00000611852 IGKV1D-13A0A0B4J2D9 117 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 J3QRK9 145 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 M0QZK8 103 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 IGKV1-13P0DP09 117 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 CD40LGP29965 261 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 TNFSF8P32971 234 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 LUMP51884 338 aaPredicted RBP13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 C11orf88Q6PI97 169 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 GLDNQ6ZMI3 551 aaPredicted RBP13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 Q6ZS46 218 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 CCDC190Q86UF4 302 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 Q8N2B8 174 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 OR5AN1Q8NGI8 311 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 PRSS22Q9GZN4 317 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 RNF114Q9Y508 228 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 OR5H14A6NHG9 310 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 H0YJW9 148 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 M0R1X1 148 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 HLA-DMAP28067 261 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 FCGR2CP31995 323 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 RCVRNP35243 200 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 RFX2P48378 723 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 PPP5CP53041 499 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 LINC00205P59089 165 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 TAS2R46P59540 309 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 RNASE12Q5GAN4 147 aaKnown RBP13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 FAM131AQ6UXB0 335 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 OVCH2Q7RTZ1 564 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 OR52I2Q8NH67 350 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 OR2T6Q8NHC8 308 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 PLSCR3Q9NRY6 295 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 KLK11Q9UBX7 282 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 SIGLEC9Q9Y336 463 aa13.18□□□□□ -0.3
CCDC28A-202ENST00000611852 FGF16O43320 207 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 PPYP01298 95 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 PMP2P02689 132 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 AADACP22760 399 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 MC5RP33032 325 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 HRH1P35367 487 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 PROK1P58294 105 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 ABCA11PQ4W5N1 156 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 PYHIN1Q6K0P9 492 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 ZNF645Q8N7E2 425 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 C3orf56Q8N813 242 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 C5orf56Q8N8D9 126 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 ZNF383Q8NA42 475 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 OR5H2Q8NGV7 314 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 GIMAP1Q8WWP7 306 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 EHFQ9NZC4 300 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 RABL2AQ9UBK7 228 aaPredicted RBP13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 RABL2BQ9UNT1 228 aa13.17□□□□□ -0.3
CCDC28A-202ENST00000611852 SH2D7A6NKC9 451 aaPredicted RBP13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 NCBP2LA6PVI3 153 aaKnown RBP13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 IGLV2-14P01704 120 aa13.16□□□□□ -0.3
CCDC28A-202ENST00000611852 F2RL1P55085 397 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms