RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 RAB40BQ12829 278 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 IL13RA2Q14627 380 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 ZNF77Q15935 545 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 LRRC75BQ2VPJ9 315 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 MS4A18Q3C1V0 323 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 KIAA1644Q3SXP7 199 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 TIGITQ495A1 244 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 FFAR4Q5NUL3 377 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 PLXDC2Q6UX71 529 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 ASCL5Q7RTU5 278 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 CDC20BQ86Y33 519 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR4N5Q8IXE1 308 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 MSRB3Q8IXL7 192 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 KMT2EQ8IZD2 1858 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 PTGR2Q8N8N7 351 aaPredicted RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR10V1Q8NGI7 309 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR51T1Q8NGJ9 327 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR4C16Q8NGL9 310 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR6N2Q8NGY6 317 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR4A16Q8NH70 328 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR4A5Q8NH83 315 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 OR51E1Q8TCB6 317 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 PTPMT1Q8WUK0 201 aaPredicted RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 SLC38A5Q8WUX1 472 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 RNF138Q8WVD3 245 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 PIGCQ92535 297 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 SNRNP40Q96DI7 357 aaKnown RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 DUX3Q96PT4 197 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 CDX2Q99626 313 aaPredicted RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 SPIN2AQ99865 258 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 SPIN2BQ9BPZ2 258 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 SRSF8Q9BRL6 282 aaKnown RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 EBPLQ9BY08 206 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 DUSP16Q9BY84 665 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 NMES1Q9C002 83 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 EIF5A2Q9GZV4 153 aaKnown RBP2.72□□□□□ -1.97
VPS35-208ENST00000568612 ST20Q9HBF5 79 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 RDH14Q9HBH5 336 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 GPR84Q9NQS5 396 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 FAM206AQ9NX38 181 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 SPANXCQ9NY87 97 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 FLRT3Q9NZU0 649 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 KIAA1456Q9P272 454 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 CLCF1Q9UBD9 225 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 RARRES3Q9UL19 164 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 KCNS2Q9ULS6 477 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 PROCRQ9UNN8 238 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 CSAG2Q9Y5P2 127 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 DNAJC15Q9Y5T4 150 aa2.72□□□□□ -1.97
VPS35-208ENST00000568612 LTBP4Q8N2S1 1624 aa2.71□□□□□ -1.97
VPS35-208ENST00000568612 PLXNA3P51805 1871 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 KIF26AQ9ULI4 1882 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 BRWD3Q6RI45 1802 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 A0A0A0MQY5 61 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 MUC21A0A0G2JKD1 596 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 A0A0U1RRA0 63 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 MUC21A0A140T8X8 626 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 DDTLA6NHG4 134 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 FAM90A20PA6NIJ5 464 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 TMEM212A6NML5 194 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 FOXI3A8MTJ6 420 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 INAFM1C9JVW0 142 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 C17orf112F2Z3M2 114 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 MS4A18H0YCH9 400 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CDC42EP2O14613 210 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 NBR2O15453 112 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 NDUFS4O43181 175 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SPRY3O43610 288 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ZNF682O95780 498 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 HRASP01112 189 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 KRASP01116 189 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 REG1AP05451 166 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 HPNP05981 417 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CRYGDP07320 174 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 PFN1P07737 140 aaKnown RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 SPINK8P0C7L1 97 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ZNF286BP0CG31 522 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CT45A6P0DMU7 189 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CT45A5P0DMU8 189 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CT45A10P0DMU9 189 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CT45A7P0DMV0 189 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 HIST1H1DP16402 221 aaKnown RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 KLK2P20151 261 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 EDN2P20800 178 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 EVI2AP22794 236 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 HTR1DP28221 377 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 HRH1P35367 487 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 GLRXP35754 106 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 PPICP45877 212 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CXCL12P48061 93 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 DLX6P56179 175 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 TAS2R46P59540 309 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 UFM1P61960 85 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 GNB2P62879 340 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CYCSP99999 105 aaKnown RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 PSG4Q00888 419 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 MFGE8Q08431 387 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 MZT1Q08AG7 82 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ACSM2AQ08AH3 577 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 PSG7Q13046 419 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms