RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	MSGN1	A6NI15	193 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	C2orf70	A6NJV1	201 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488		H3BNX3	289 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	RBMXL2	O75526	392 aa	Known RBP	12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	BAG2	O95816	211 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	CD2	P06729	351 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	ATF4	P18848	351 aa	Predicted RBP	12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	BDKRB2	P30411	391 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	PJVK	Q0ZLH3	352 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	GPR176	Q14439	515 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	ZNF554	Q86TJ5	538 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	DRAXIN	Q8NBI3	349 aa	Predicted RBP	12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	OR5AN1	Q8NGI8	311 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	MRPL30	Q8TCC3	161 aa	Known RBP	12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	TMEM68	Q96MH6	324 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	PHB2	Q99623	299 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	KRTAP4-5	Q9BYR2	181 aa		12.07	□□□□□ -0.48
CLK3-223	ENST00000568488	SPDEF	O95238	335 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	APOC4	P55056	127 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	SSBP2	P81877	361 aa	Predicted RBP	12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	FLOT2	Q14254	428 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	LINC00336	Q6ZUF6	198 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488		Q6ZWC4	215 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	THRSP	Q92748	146 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	CIB1	Q99828	191 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	BANF2	Q9H503	90 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	ABRACL	Q9P1F3	81 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	LRRC42	Q9Y546	428 aa		12.06	□□□□□ -0.48
CLK3-223	ENST00000568488	FAM90A23P	A8MXZ1	464 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	XRCC3	O43542	346 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	GPX5	O75715	221 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	SC5D	O75845	299 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	SCAF4	O95104	1147 aa	Known RBP	12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	IGKV1-16	P04430	117 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	IFNA4	P05014	189 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	FUT3	P21217	361 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	GBX2	P52951	348 aa	Predicted RBP	12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	LINC00205	P59089	165 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	ATP5G2	Q06055	141 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	EXOSC2	Q13868	293 aa	Known RBP	12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	TM4SF20	Q53R12	229 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	GPR148	Q8TDV2	347 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	CACNG8	Q8WXS5	425 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	ORAI1	Q96D31	301 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	MYCBP	Q99417	103 aa	Predicted RBP	12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	ZNF184	Q99676	751 aa	Predicted RBP	12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	SELENOI	Q9C0D9	397 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	IMPAD1	Q9NX62	359 aa		12.05	□□□□□ -0.48
CLK3-223	ENST00000568488	HLA-A	P01891	365 aa	Known RBP	12.04	□□□□□ -0.48
CLK3-223	ENST00000568488	ANKRD55	Q3KP44	614 aa		12.04	□□□□□ -0.48
CLK3-223	ENST00000568488	ZNF57	Q68EA5	555 aa	Predicted RBP	12.04	□□□□□ -0.48
CLK3-223	ENST00000568488	GLIPR1L1	Q6UWM5	242 aa		12.04	□□□□□ -0.48
CLK3-223	ENST00000568488	ZDHHC13	Q8IUH4	622 aa		12.04	□□□□□ -0.48
CLK3-223	ENST00000568488	TMEM61	Q8N0U2	210 aa		12.04	□□□□□ -0.48
CLK3-223	ENST00000568488	SYS1	Q8N2H4	156 aa		12.04	□□□□□ -0.48
CLK3-223	ENST00000568488	FBXL17	Q9UF56	701 aa		12.04	□□□□□ -0.48
CLK3-223	ENST00000568488	EXOG	Q9Y2C4	368 aa	Known RBP	12.04	□□□□□ -0.48
CLK3-223	ENST00000568488	GMPPB	Q9Y5P6	360 aa		12.04	□□□□□ -0.48
CLK3-223	ENST00000568488		A0A1B0GVY2	172 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	TCRBV3S1	A0A5B6	114 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	PPP5D1	E7EU14	171 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	TUSC2	O75896	110 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	OR2C1	O95371	312 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	PRH1	P02810	166 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	CALB2	P22676	271 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	CBLN1	P23435	193 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	FAS	P25445	335 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	GTF2A1	P52655	376 aa	Predicted RBP	12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	RHOG	P84095	191 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	ZNF45	Q02386	682 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	MRPL28	Q13084	256 aa	Known RBP	12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	MUL1	Q969V5	352 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	LGALS12	Q96DT0	336 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	AKIP1	Q9NQ31	210 aa		12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	ZNF230	Q9UIE0	474 aa	Predicted RBP	12.03	□□□□□ -0.48
CLK3-223	ENST00000568488	PKD1	P98161	4303 aa		12.02	□□□□□ -0.48
CLK3-223	ENST00000568488	MPPED1	O15442	326 aa		12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	CRTAP	O75718	401 aa	Predicted RBP	12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	APOA2	P02652	100 aa		12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	GLA	P06280	429 aa		12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	NANOS2	P60321	138 aa	Known RBP	12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	HMGN3	Q15651	99 aa		12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	STPG3	Q8N7X2	389 aa		12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	ZNF383	Q8NA42	475 aa		12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	KCNG3	Q8TAE7	436 aa		12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	TRUB1	Q8WWH5	349 aa	Known RBP	12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	RNF183	Q96D59	192 aa		12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	PLA2G2E	Q9NZK7	142 aa		12.02	□□□□□ -0.49
CLK3-223	ENST00000568488	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	FAM223B	A6NKX1	122 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	UBE2C	O00762	179 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	OR9G9	P0C7N8	305 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	MGMT	P16455	207 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	RBMS2	Q15434	407 aa	Known RBP	12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	SLC25A30	Q5SVS4	291 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	AWAT2	Q6E213	333 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	SIGIRR	Q6IA17	410 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	PDPN	Q86YL7	162 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	FAM223A	Q8IWN6	122 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	JAGN1	Q8N5M9	183 aa		12.01	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms