RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ZXDAP98168 799 aa11.15□□□□□ -0.63
CLN3-210ENST00000563874 ZNF66Q6ZN08 573 aa11.15□□□□□ -0.63
CLN3-210ENST00000563874 TMEM183AQ8IXX5 376 aa11.15□□□□□ -0.63
CLN3-210ENST00000563874 CT55Q8WUE5 264 aa11.15□□□□□ -0.63
CLN3-210ENST00000563874 PINX1Q96BK5 328 aaKnown RBP11.15□□□□□ -0.63
CLN3-210ENST00000563874 PARLQ9H300 379 aa11.15□□□□□ -0.63
CLN3-210ENST00000563874 OR51I2Q9H344 312 aa11.15□□□□□ -0.63
CLN3-210ENST00000563874 BOKQ9UMX3 212 aaPredicted RBP11.15□□□□□ -0.63
CLN3-210ENST00000563874 XKRY2A2RUG3 117 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 H7BYZ3 331 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 SYNGR4O95473 234 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 APLNRP35414 380 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 CYP2G1PQ6ZSU1 146 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 WDR86Q86TI4 376 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 TMEM37Q8WXS4 190 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 HLA-CQ95604 372 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 LINC00470Q9BZP3 86 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 CTDSP1Q9GZU7 261 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 OPN3Q9H1Y3 402 aaPredicted RBP11.14□□□□□ -0.63
CLN3-210ENST00000563874 SRD5A3Q9H8P0 318 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 AURKAIP1Q9NWT8 199 aaPredicted RBP11.14□□□□□ -0.63
CLN3-210ENST00000563874 ZNF705GA8MUZ8 300 aaPredicted RBP11.14□□□□□ -0.63
CLN3-210ENST00000563874 GZMBP10144 247 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 C1orf185Q5T7R7 199 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 REC114Q7Z4M0 266 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 OR2M7Q8NG81 312 aa11.14□□□□□ -0.63
CLN3-210ENST00000563874 ZNF703Q9H7S9 590 aaPredicted RBP11.14□□□□□ -0.63
CLN3-210ENST00000563874 CHTOPQ9Y3Y2 248 aaKnown RBP11.14□□□□□ -0.63
CLN3-210ENST00000563874 TNRC6AQ8NDV7 1962 aaKnown RBP11.14□□□□□ -0.63
CLN3-210ENST00000563874 OR5B21A6NL26 309 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 PPP5D1E7EU14 171 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 CDIPTO14735 213 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 KBTBD11O94819 623 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 IDH3GP51553 393 aaPredicted RBP11.13□□□□□ -0.63
CLN3-210ENST00000563874 TNFRSF9Q07011 255 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 LINC00596Q86U02 117 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 OR51G1Q8NGK1 321 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 OR1P1Q8NH06 330 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 ZDHHC16Q969W1 377 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 WFIKKN1Q96NZ8 548 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 NEURL1O76050 574 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 SERPINA7P05543 415 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 ARR3P36575 388 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 PSMB3P49720 205 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 LINC00205P59089 165 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 TFF3Q07654 80 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 OR10G9Q8NGN4 311 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 OR10G7Q8NGN6 311 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 OR5B12Q96R08 314 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 MPC1Q9Y5U8 109 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 PCSK5Q92824 1860 aa11.13□□□□□ -0.63
CLN3-210ENST00000563874 SLC31A2O15432 143 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 TGOLN2O43493 480 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 TFF1P04155 84 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 EGR1P18146 543 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 FGF7P21781 194 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 TAS2R60P59551 318 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 RPL30P62888 115 aaKnown RBP11.12□□□□□ -0.63
CLN3-210ENST00000563874 ZNF497Q6ZNH5 498 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 LINC00696Q6ZRV3 163 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 FUT9Q9Y231 359 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 J3QT63 122 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 IFNL4K9M1U5 179 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 PAGE4O60829 102 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 RBMXL2O75526 392 aaKnown RBP11.12□□□□□ -0.63
CLN3-210ENST00000563874 SNRPCP09234 159 aaKnown RBP11.12□□□□□ -0.63
CLN3-210ENST00000563874 TRA2AQ13595 282 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLN3-210ENST00000563874 ALKBH6Q3KRA9 238 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 DCAF12Q5T6F0 453 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 BTNL3Q6UXE8 466 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 TMEM14EPQ6UXP3 125 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 TMEM105Q8N8V8 129 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 SCCPDHQ8NBX0 429 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 OR1L1Q8NH94 360 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 OR2D2Q9H210 308 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 TCAPO15273 167 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 ZG16O60844 167 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 NXPH2O95156 264 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 JOSD1Q15040 202 aaPredicted RBP11.12□□□□□ -0.63
CLN3-210ENST00000563874 FFAR4Q5NUL3 377 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 GPR179Q6PRD1 2367 aa11.12□□□□□ -0.63
CLN3-210ENST00000563874 DSPP15924 2871 aaKnown RBP11.12□□□□□ -0.63
CLN3-210ENST00000563874 PRR14LQ5THK1 2151 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 LRP5LA4QPB2 252 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 C1QTNF9BB2RNN3 333 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 GRPP07492 148 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 CELA3BP08861 270 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 CHRNA7P36544 502 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 SAPCD1Q5SSQ6 148 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 MDP1Q86V88 176 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 CXorf67Q86X51 503 aaPredicted RBP11.11□□□□□ -0.63
CLN3-210ENST00000563874 MCEMP1Q8IX19 187 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 ZNF664Q8N3J9 261 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 FAM173AQ9BQD7 235 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 MRPS18CQ9Y3D5 142 aaKnown RBP11.11□□□□□ -0.63
CLN3-210ENST00000563874 ASPMQ8IZT6 3477 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 TNRC6BQ9UPQ9 1833 aaKnown RBP11.11□□□□□ -0.63
CLN3-210ENST00000563874 NPIPB11E5RHQ5 1161 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 S1PR2O95136 353 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 IFNA10P01566 189 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms