RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 VAMP3Q15836 100 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 Q6ZRM9 215 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 PPP1R32Q7Z5V6 425 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 TUSC5Q8IXB3 177 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 GPR146Q96CH1 333 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 GNPNAT1Q96EK6 184 aaPredicted RBP9.62□□□□□ -0.87
CUX1-218ENST00000560541 REPIN1Q9BWE0 567 aaKnown RBP9.62□□□□□ -0.87
CUX1-218ENST00000560541 PRDM14Q9GZV8 571 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 ZNF665Q9H7R5 613 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 ERRFI1Q9UJM3 462 aaPredicted RBP9.62□□□□□ -0.87
CUX1-218ENST00000560541 PILRBQ9UKJ0 227 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 RNF115Q9Y4L5 304 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 NCOR1O75376 2440 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 CACNA1DQ01668 2161 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 SERPINE2P07093 398 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 OCIAD2Q56VL3 154 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 BCL2L2Q92843 193 aaPredicted RBP9.62□□□□□ -0.87
CUX1-218ENST00000560541 TVP23CQ96ET8 276 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 HES7Q9BYE0 225 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 OR1A1Q9P1Q5 309 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 LAMP3Q9UQV4 416 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 ATP23Q9Y6H3 246 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 ARHGAP21Q5T5U3 1957 aa9.62□□□□□ -0.87
CUX1-218ENST00000560541 TUSC2O75896 110 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 OR10J1P30954 320 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 DUSP3P51452 185 aaPredicted RBP9.61□□□□□ -0.87
CUX1-218ENST00000560541 GNB2P62879 340 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 MKXQ8IYA7 352 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 ZNF295-AS1Q8N0V1 137 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 OR1K1Q8NGR3 316 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 MS4A10Q96PG2 267 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 PRDM6Q9NQX0 595 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 GPR179Q6PRD1 2367 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 ZFHX4Q86UP3 3567 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 MED12LQ86YW9 2145 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 KIR2DS1A0A191URI9 304 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 CYC1P08574 325 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 F2RP25116 425 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 KIR2DS4P43632 304 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 TAS2R30P59541 319 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 KIR2DS1Q14954 304 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 ZNF506Q5JVG8 444 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 PCSK4Q6UW60 755 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 ST6GALNAC3Q8NDV1 305 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 PSMF1Q92530 271 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 CLDN23Q96B33 292 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 RPRMQ9NS64 109 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 CACNG5Q9UF02 275 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 VAX2Q9UIW0 290 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 PPP1R3CQ9UQK1 317 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 LOC400499M0QZD8 3231 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 H0Y980 276 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 HSPB1P04792 205 aaKnown RBP9.61□□□□□ -0.87
CUX1-218ENST00000560541 CYB561P49447 251 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 HINT1P49773 126 aaPredicted RBP9.61□□□□□ -0.87
CUX1-218ENST00000560541 BAXQ07812 192 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 C3AR1Q16581 482 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 CEACAM21Q3KPI0 293 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 FBLN7Q53RD9 439 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 SPATA46Q5T0L3 261 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 COLCA1Q6ZS62 124 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 OR5D13Q8NGL4 314 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 MRPL30Q8TCC3 161 aaKnown RBP9.61□□□□□ -0.87
CUX1-218ENST00000560541 LOXL4Q96JB6 756 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 CST9LQ9H4G1 147 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 SMDT1Q9H4I9 107 aa9.61□□□□□ -0.87
CUX1-218ENST00000560541 FAM166BA8MTA8 275 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 RHBDL1O75783 438 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 IFNA5P01569 189 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 CD55P08174 381 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 ERVS71-1P61550 626 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 PMS2CLQ68D20 193 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 DSPP15924 2871 aaKnown RBP9.6□□□□□ -0.87
CUX1-218ENST00000560541 GFRA1P56159 465 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 ARL16Q0P5N6 197 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 TMEM95Q3KNT9 176 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 ZNF709Q8N972 641 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 ORAOV1Q8WV07 137 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 PINX1Q96BK5 328 aaKnown RBP9.6□□□□□ -0.87
CUX1-218ENST00000560541 SELENOKQ9Y6D0 94 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 DOCK11Q5JSL3 2073 aa9.6□□□□□ -0.87
CUX1-218ENST00000560541 GTF3C1Q12789 2109 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 TRAV24A0A0B4J272 114 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 CLEC18AA5D8T8 446 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 AHRRA9YTQ3 701 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 HLA-DRB3P79483 266 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 IL24Q13007 206 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 TPTE2P1Q5T6R2 138 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 CLEC18CQ8NCF0 446 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 RBMXL1Q96E39 390 aaKnown RBP9.59□□□□□ -0.87
CUX1-218ENST00000560541 LRFN1Q9P244 771 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 KCNS2Q9ULS6 477 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 FUT9Q9Y231 359 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 OR2W1Q9Y3N9 320 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 TNRC18O15417 2968 aaPredicted RBP9.59□□□□□ -0.87
CUX1-218ENST00000560541 LOC102723971A0A1B0GUV8 181 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 CD300LBA8K4G0 201 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 HMGB3O15347 200 aaKnown RBP9.59□□□□□ -0.87
CUX1-218ENST00000560541 UBE2G2P60604 165 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 ZFP36L1Q07352 338 aaKnown RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms