RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 LRP11Q86VZ4 500 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 ZBTB34Q8NCN2 500 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 OR10V1Q8NGI7 309 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 OR5D13Q8NGL4 314 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 NINJ1Q92982 152 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 C14orf144Q96I85 54 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 SNX22Q96L94 193 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 TMEM56Q96MV1 263 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 DOK5Q9P104 306 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 RNF7Q9UBF6 113 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 UBE2J1Q9Y385 318 aaPredicted RBP10.61□□□□□ -0.71
SHMT2-229ENST00000557348 TMEM56-RWDD3S4R434 201 aa10.61□□□□□ -0.71
SHMT2-229ENST00000557348 H0Y980 276 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.6□□□□□ -0.71
SHMT2-229ENST00000557348 DVL1O14640 695 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 MGST3O14880 152 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 WNT9BO14905 357 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 CDS2O95674 445 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 LHBP01229 141 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 MBPP02686 304 aaPredicted RBP10.6□□□□□ -0.71
SHMT2-229ENST00000557348 IRF2P14316 349 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 BTF3P20290 206 aaKnown RBP10.6□□□□□ -0.71
SHMT2-229ENST00000557348 DDTP30046 118 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 S100A10P60903 97 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 COL10A1Q03692 680 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 BSPH1Q075Z2 132 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 MSMPQ1L6U9 139 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 GGNBP1Q5YKI7 109 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 RNASE6Q93091 150 aaKnown RBP10.6□□□□□ -0.71
SHMT2-229ENST00000557348 MSI2Q96DH6 328 aaKnown RBP10.6□□□□□ -0.71
SHMT2-229ENST00000557348 RCC1LQ96I51 464 aaKnown RBP10.6□□□□□ -0.71
SHMT2-229ENST00000557348 C18orf12Q96KH6 178 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 PRDM13Q9H4Q3 707 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 PRORYQ9H606 182 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 hCG_1809904A0A1W2PP81 198 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 A0A1W2PR64 198 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 A0A1W2PRV1 198 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 LRRC30A6NM36 301 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 GPR37O15354 613 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 SPINT2O43291 252 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 SPRY3O43610 288 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 PSPNO60542 156 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 THBDP07204 575 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 MMP9P14780 707 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 GZMHP20718 246 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 IL2RGP31785 369 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 RPS10P46783 165 aaKnown RBP10.6□□□□□ -0.71
SHMT2-229ENST00000557348 GABRA2P47869 451 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 OR3A1P47881 315 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 SSX2Q16385 188 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 ZNF818PQ6ZRF7 136 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 TBC1D26Q86UD7 250 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 ZNF383Q8NA42 475 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 FAM222BQ8WU58 562 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 ITLN1Q8WWA0 313 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 IL1F10Q8WWZ1 152 aa10.6□□□□□ -0.71
SHMT2-229ENST00000557348 LIN7CQ9NUP9 197 aaKnown RBP10.6□□□□□ -0.71
SHMT2-229ENST00000557348 DPRXA6NFQ7 191 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 IGHV1-46P01743 117 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 PSG2P11465 335 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 UCP1P25874 307 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 OR2B8PP59922 312 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 IGFBP7Q16270 282 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 NCMAPQ5T1S8 102 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 MOGAT3Q86VF5 341 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 ZNF695Q8IW36 515 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 C1orf87Q8N0U7 546 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 GCSAMQ8N6F7 178 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 GNPNAT1Q96EK6 184 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-229ENST00000557348 TVP23CQ96ET8 276 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 FAM234AQ9H0X4 552 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 PITPNC1Q9UKF7 332 aa10.59□□□□□ -0.71
SHMT2-229ENST00000557348 RBM7Q9Y580 266 aaKnown RBP10.59□□□□□ -0.71
SHMT2-229ENST00000557348 IGHV3-64DA0A0J9YX35 117 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 K7N7A8 449 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 CCL21O00585 134 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 OR4A8P0C604 315 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 FGF7P21781 194 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 F2RP25116 425 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 GLIPR1P48060 266 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 DLK1P80370 383 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 HTD2P86397 168 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 ADIPOQQ15848 244 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 TMEM30BQ3MIR4 351 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 KHDC3LQ587J8 217 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 TCTEX1D1Q8N7M0 179 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 CD300LFQ8TDQ1 290 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 SSX3Q99909 188 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 CTDSP1Q9GZU7 261 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 OR6C3Q9NZP0 311 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 GSKIPQ9P0R6 139 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 ERRFI1Q9UJM3 462 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-229ENST00000557348 PKD1L2Q7Z442 2459 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 ASPMQ8IZT6 3477 aa10.58□□□□□ -0.72
SHMT2-229ENST00000557348 DMXL2Q8TDJ6 3036 aa10.57□□□□□ -0.72
SHMT2-229ENST00000557348 TRAV1-1A0A0B4J248 108 aa10.57□□□□□ -0.72
SHMT2-229ENST00000557348 IGKV1D-13A0A0B4J2D9 117 aa10.57□□□□□ -0.72
SHMT2-229ENST00000557348 RBFOX3A6NFN3 312 aa10.57□□□□□ -0.72
SHMT2-229ENST00000557348 C17orf100A8MU93 164 aa10.57□□□□□ -0.72
SHMT2-229ENST00000557348 AGPAT2O15120 278 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms